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  5. Spov3_C0104.00003

Spov3_C0104.00003


Description : not classified


Gene families : OG0000014 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000014_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Spinacia oleracea (Sol) PCC: Spov3_C0104.00003
Cluster Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_14

Target Alias Description ECC score Gene Family Method Actions
Spov3_C0001.00103 ATTIF3B1,... not classified 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0010.00100 No alias not classified 0.08 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0029.00028 No alias not classified 0.06 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0029.00029 No alias not classified 0.09 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0047.00003 REIL2, FZF, STCH4 not classified 0.07 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0047.00004 No alias not classified 0.09 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0167.00002 No alias not classified 0.09 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0544.00002 No alias not classified 0.09 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_S01.00134 No alias not classified 0.06 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_S11.00046 APC2 not classified 0.11 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_S13.00018 No alias not classified 0.1 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.03223 No alias not classified 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.04314 No alias not classified 0.07 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.04721 AtCYP57, CYP57 not classified 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.05166 No alias not classified 0.07 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.01695 No alias not classified 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.02022 AtCYP57, CYP57 not classified 0.09 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.02177 VPS9, ATVPS9A, VPS9A RAB5 nucleotide exchange factor *(VPS9) 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.03615 No alias not classified 0.1 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr4.00243 MRP8, ABCC6, ATMRP8 not classified 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr4.00542 No alias not classified 0.09 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr4.00572 No alias not classified 0.07 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.02624 No alias not classified 0.1 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.03998 MRP8, ABCC6, ATMRP8 not classified 0.06 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr6.01906 No alias not classified 0.08 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr6.01907 HMA7, AtHMP51, RAN1 not classified 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr6.02900 No alias not classified 0.1 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr6.03196 REIL2, FZF, STCH4 not classified 0.06 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006259 DNA metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0015074 DNA integration IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0015291 secondary active transmembrane transporter activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0015297 antiporter activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0022804 active transmembrane transporter activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0030246 carbohydrate binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0030247 polysaccharide binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0042910 xenobiotic transmembrane transporter activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0055085 transmembrane transport IEP Spinacia oleracea GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR025452 DUF4218 665 714
IPR025312 DUF4216 873 943
IPR029480 Transpos_assoc 34 103
IPR004242 Transposase_21 342 551
No external refs found!