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Aliases : FAR1
Description : FRS/FRF-type transcription factor
Gene families : OG0000057 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000057_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Spinacia oleracea (Sol) PCC: Spov3_C0030.00051 | |
| Cluster | Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_11 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Spov3_C0095.00002 | KAT3, AtLKT1, KC1, ATKC1 | FRS/FRF-type transcription factor | 0.08 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_C0515.00001 | AFB3 | not classified | 0.1 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_S07.00021 | No alias | FRS/FRF-type transcription factor | 0.07 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_chr1.00451 | KAT3, AtLKT1, KC1, ATKC1 | FRS/FRF-type transcription factor | 0.08 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_chr1.00651 | FAR1 | FRS/FRF-type transcription factor | 0.11 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_chr1.00793 | FAR1 | FRS/FRF-type transcription factor | 0.07 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_chr1.01997 | FHY3, CPD45 | FRS/FRF-type transcription factor | 0.07 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_chr1.03698 | No alias | FRS/FRF-type transcription factor | 0.07 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_chr2.02179 | KCBP, PKCBP, ZWI | FRS/FRF-type transcription factor | 0.06 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_chr2.02827 | FAR1 | FRS/FRF-type transcription factor | 0.08 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_chr2.02867 | FAR1 | FRS/FRF-type transcription factor | 0.09 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_chr2.05010 | FAR1 | FRS/FRF-type transcription factor | 0.08 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_chr4.01954 | FAR1 | FRS/FRF-type transcription factor | 0.06 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_chr4.01955 | No alias | FRS/FRF-type transcription factor | 0.04 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_chr5.02335 | No alias | FRS/FRF-type transcription factor | 0.07 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_chr5.02818 | AFB3 | FRS/FRF-type transcription factor | 0.01 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_chr6.02605 | No alias | FRS/FRF-type transcription factor | 0.12 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | Spinacia oleracea GO terms from Neighborhoods |
| CC | GO:0005681 | spliceosomal complex | IEP | Spinacia oleracea GO terms from Neighborhoods |
| CC | GO:0005743 | mitochondrial inner membrane | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0006848 | pyruvate transport | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0006850 | mitochondrial pyruvate transmembrane transport | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0009143 | nucleoside triphosphate catabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0015711 | organic anion transport | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0015718 | monocarboxylic acid transport | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0015849 | organic acid transport | IEP | Spinacia oleracea GO terms from Neighborhoods |
| CC | GO:0019866 | organelle inner membrane | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0034655 | nucleobase-containing compound catabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0042254 | ribosome biogenesis | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0046434 | organophosphate catabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0046942 | carboxylic acid transport | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0047429 | nucleoside triphosphate diphosphatase activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:1901292 | nucleoside phosphate catabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:1901475 | pyruvate transmembrane transport | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:1903825 | organic acid transmembrane transport | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:1905039 | carboxylic acid transmembrane transport | IEP | Spinacia oleracea GO terms from Neighborhoods |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR018289 | MULE_transposase_dom | 69 | 161 |
| No external refs found! |