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Aliases : CSTF50
Description : not classified
Gene families : OG0000102 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000102_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Spinacia oleracea (Sol) PCC: Spov3_C0016.00042 | |
| Cluster | Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_16 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Spov3_C0005.00025 | FUT8 | not classified | 0.02 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_C0006.00059 | PAL2, ATPAL2 | not classified | 0.07 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_C0563.00001 | PAL2, ATPAL2 | not classified | 0.05 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_S03.00015 | PAL2, ATPAL2 | not classified | 0.1 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_S10.00026 | AFT, AKR2, AKR2A | not classified | 0.13 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_chr1.01280 | PAL2, ATPAL2 | not classified | 0.1 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_chr1.02785 | PAL2, ATPAL2 | not classified | 0.11 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_chr1.02863 | No alias | not classified | 0.05 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_chr2.02137 | PAL2, ATPAL2 | not classified | 0.09 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_chr2.02409 | AGO3 | not classified | 0.02 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_chr2.02410 | DAR3 | not classified | 0.07 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_chr2.02849 | GALT6 | not classified | 0.03 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_chr2.02850 | GRC3 | not classified | 0.02 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_chr2.03384 | bHLH13, bHLH013, JAM2 | not classified | 0.1 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_chr3.02143 | No alias | not classified | 0.02 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_chr3.02605 | No alias | not classified | 0.09 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_chr5.04061 | PAL2, ATPAL2 | not classified | 0.1 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_chr6.02905 | PAL2, ATPAL2 | not classified | 0.03 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_chr6.03114 | PAL2, ATPAL2 | not classified | 0.03 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000381 | regulation of alternative mRNA splicing, via spliceosome | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0004097 | catechol oxidase activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0008094 | ATP-dependent activity, acting on DNA | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0016679 | oxidoreductase activity, acting on diphenols and related substances as donors | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0016682 | oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0016849 | phosphorus-oxygen lyase activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0033897 | ribonuclease T2 activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0043484 | regulation of RNA splicing | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0048024 | regulation of mRNA splicing, via spliceosome | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0050684 | regulation of mRNA processing | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:1903311 | regulation of mRNA metabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR026960 | RVT-Znf | 37 | 121 |
| No external refs found! |