Heatmap: Cluster_16 (Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Light: 260 uE m-2 s-1
Light: 195 uE m-2 s-1
Light: 130 uE m-2 s-1 (Control)
Light: 65 uE m-2 s-1
Photoperiod: L24
Photoperiod: L18D6
Photoperiod: L13D11 (Control)
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C (Control)
Temperature: 25°C
Temperature: 30°C
- - - 0.91 - 3.04 0.96 - - - - - 0.98 - - 1.94 - - - - - - - 3.29 - - - - 1.24 -
- - - - - - - - - - - - - - - - - - - - - - - 4.91 - - - - - -
2.59 0.74 2.23 - - - - - - - 0.64 - - 1.53 -7.61 2.26 - - - - - 0.29 - 2.02 0.48 - - 0.81 - -
1.52 1.0 - -0.94 - -0.75 -0.46 - 1.94 -0.27 - 0.38 1.59 1.05 0.42 1.58 - -0.7 0.38 - 0.19 -0.73 - 0.93 - - -0.92 - - 0.86
- - - - - - - - - - - - - - - - - - - - - - - 4.91 - - - - - -
- - - - - - - - - 3.38 - - - - - - - - - - - - - 4.29 - - - - - -
-1.04 0.65 -0.2 1.39 -0.71 -0.05 -2.69 -2.79 -0.32 0.12 - 0.24 1.09 1.2 -1.23 1.18 0.06 -1.28 -2.74 -0.56 -0.37 -0.2 -1.8 -1.19 0.33 -0.28 0.3 -1.48 0.72 1.28
- 1.03 - 2.57 - - - - - 0.95 - 0.98 1.44 1.72 - - 0.95 - - - 1.8 - - 2.74 - - - - - -
- 1.03 - 2.57 - - - - - 0.95 - 0.98 1.44 1.72 - - 0.95 - - - 1.8 - - 2.74 - - - - - -
- - - 2.73 1.35 - - - - - - - 1.03 - 1.22 - - - - - - 1.14 - 3.58 - - - - - 1.19
1.76 - - - - 1.44 - - - - - - - - - - - - - - - 1.3 2.02 4.12 - - - - - -
-1.02 0.58 -3.9 -0.12 -24.56 - 0.75 - 1.07 - 0.9 - - 0.78 - - 0.77 - - -4.3 -1.09 1.32 0.11 3.17 -0.9 1.18 -1.1 -17.02 -1.42 0.29
1.85 - - - - 2.64 - - - - - - 1.06 - 2.74 - - 2.27 - 1.76 - - - - - 0.73 0.6 - - -
- - - - - - - - - - - - - - - - - -11.93 - 1.4 -2.55 - -8.87 4.74 -9.17 -6.68 -1.07 - - -
- - - - - - - - - - - - - - - - - -11.93 - 1.4 -2.55 - -8.87 4.74 -9.17 -6.68 -1.07 - - -
- - - - - - - - - - - - - - - - - - - 1.87 - 0.87 0.6 4.41 - - - - - 0.77
- 0.86 - - 1.72 - - 0.75 - - - 1.29 2.01 - 1.59 - - - - - 1.1 1.78 -0.4 2.07 - -0.19 0.4 0.04 - -
0.42 0.54 0.46 -0.39 0.35 0.27 -0.47 0.22 0.78 -0.76 -0.22 -3.41 0.38 0.02 0.13 -0.11 -0.1 0.56 -0.23 -1.52 -0.4 -0.68 0.16 -0.07 -0.67 0.21 -0.74 0.36 0.48 -0.02
- - - - - - - - - - - - 1.08 - 1.94 - - 2.84 - - - 0.79 1.94 3.51 - - - - - -
2.03 - - - - - - - - - - - - - - - - - - - - - - 2.84 2.9 - 3.5 - - -
0.86 0.67 0.34 -0.7 0.82 -1.97 - -1.59 1.87 -0.54 0.44 -0.83 0.92 -0.73 -0.84 -1.7 0.32 -1.89 -0.81 -1.79 0.51 -0.25 0.3 -0.87 -1.69 0.92 -0.76 0.98 0.38 -1.94
- - 1.64 -0.63 0.69 -0.95 - -0.61 - - - - 0.29 - 0.13 - - 2.89 -0.78 - - 0.61 0.43 2.86 - - 0.81 -0.61 -0.67 -
Spov3_chr1.04598 (ENODL20)
- - - - - - - - 0.49 - - 0.56 - - 0.5 - - 1.36 1.5 - - 2.32 2.86 2.47 - 0.3 - - - 0.39
- - - 0.49 - - - - - - - - 0.83 - - - - 1.58 1.88 - - - - 3.49 - 0.83 2.42 0.81 - -
- - - - - - 2.23 - - 2.2 - - 2.47 - - - - - - - - - - 3.92 - - - - - -
Spov3_chr2.01059 (CYP87A2)
0.69 -1.36 0.25 -1.39 -0.43 0.04 -0.45 -0.38 1.99 -1.29 -1.15 - 1.51 0.23 0.08 0.26 0.73 - - - 1.36 0.53 -1.51 1.51 - -0.49 0.05 - -0.51 -0.49
- - - - - 1.86 2.01 - - - - - - - 2.84 - - - - - - 1.87 - 2.99 - 1.84 - - - -
- - - - - - - - - - - - - - - - - - - - - - - 4.91 - - - - - -
0.88 0.2 0.35 0.92 1.04 -1.16 0.41 0.12 -0.35 0.14 -0.88 -0.25 0.46 0.3 -0.17 -0.17 -0.67 -0.27 -0.98 -1.19 -0.17 0.07 -1.15 -1.45 0.67 -0.71 -0.77 -0.07 0.67 -0.35
- - - - - - - - - - - - - - - - - - - - - - - 4.91 - - - - - -
0.8 0.24 -1.33 1.07 -0.02 -1.69 -1.49 0.26 - -0.43 -1.29 - -0.47 0.09 1.21 - 0.61 - 0.83 0.98 -0.48 -1.72 -0.63 1.61 0.46 -1.73 -1.64 -0.2 0.65 1.03
-0.13 -0.19 1.06 - 1.24 - 0.84 - 1.48 - - 0.64 - 0.61 2.18 - - 0.5 0.43 0.61 - - - 2.18 - - -0.66 - - 1.08
0.14 0.4 -0.46 -1.61 0.87 -1.65 0.43 -1.64 -0.28 -0.52 1.09 0.58 -0.48 0.61 -1.64 1.22 0.29 - -1.6 -1.67 0.37 -1.69 -0.37 0.69 -0.31 -1.64 -0.42 0.67 0.86 0.62
- 0.22 0.7 - 1.65 -0.99 - -0.71 0.13 1.19 - - 1.75 - 1.31 - -0.96 1.24 - -0.07 -0.89 1.49 - 0.3 1.49 - -0.79 0.39 -0.67 -
0.66 0.29 -0.71 -0.94 -0.54 -1.59 -0.14 0.29 -0.42 -0.4 0.46 -0.22 1.1 -0.37 0.77 -1.34 0.16 0.83 -1.28 -0.6 0.56 -0.92 -0.51 -0.45 0.56 0.05 0.66 0.19 -0.74 -0.14
- - 1.74 1.98 - - - - - - - - - - - - - 3.66 - - - - 1.76 2.75 - - - - - -
0.14 0.44 0.06 -0.15 -0.37 -0.13 -0.3 0.19 0.03 0.31 -0.11 0.46 0.2 -0.28 0.16 0.39 0.17 0.52 -0.33 -0.77 -0.47 -0.15 -0.58 0.04 -0.06 0.0 -0.02 0.15 -0.55 0.01
- -15.98 - -17.62 1.07 - -4.67 - 1.71 0.57 - - - - 2.17 - 0.7 -0.88 - - - 0.94 - 2.51 1.05 - 1.42 0.07 1.61 -
- 2.49 - 2.34 2.06 - - - - - - - - - - - - - - - - - - 3.33 - - - - - 2.35
-0.03 0.02 -0.18 -0.13 0.02 -0.51 -0.49 -0.22 0.58 0.21 0.26 0.15 -0.12 0.07 0.17 0.21 0.33 -0.91 -0.15 -0.3 0.18 0.3 -0.12 0.26 -0.2 0.22 -0.06 0.24 -0.26 -0.45
- 3.79 - - - - - - - 2.72 - - - 2.57 - 1.89 - - - - - - - - - - - - - -
0.35 - 1.12 1.46 1.04 - - -0.74 - - -0.68 -0.97 - 0.15 - -0.67 - - - -0.26 0.13 -1.08 - 2.49 - -0.96 0.85 0.43 2.72 -
- - - - - - - - - - - - - - - - - - - - - - - 4.91 - - - - - -
1.08 -0.04 - - -0.18 2.07 - 1.58 - 0.96 - 1.48 - - - - - - - - - - - 2.39 - 1.96 - - 2.31 -
- 0.73 - - - - - 2.63 0.51 0.63 - - - - - 1.71 - - 0.66 - - - - 3.43 - 1.84 - - - -
- - - 3.54 - - - - 2.69 - - - - - - - - - - - - - - 3.58 - - - - - -
- - - - - - - - - - - - - - - - - 3.86 - - - - - 3.95 - - - - - -
- - - - - - - - - 1.43 - 1.24 - 1.12 - 1.75 1.43 - - - - - - 2.61 - - 1.23 1.81 2.26 -
- - - - - - - - - - - - - - - - - - - - - - - 4.91 - - - - - -
- - - 2.95 - - - - - - - - - - 3.15 - - - - - - - - 3.74 - - - - - -
- - - - - - - - - - - - - - - - - - - - - - - 4.91 - - - - - -
0.44 0.24 -0.15 0.25 0.04 -0.2 -0.2 -0.08 0.15 0.23 -0.58 -0.5 -0.27 0.21 -0.35 -0.02 0.01 -0.09 -0.2 -0.22 -0.01 -0.22 -0.1 0.18 0.14 0.21 -0.26 0.3 0.33 0.09
-1.22 1.18 -0.48 0.21 -0.02 -0.17 0.73 1.72 -1.56 -1.49 -0.45 -0.63 0.23 - - 0.83 0.45 -1.48 -0.1 - - - -1.51 1.71 0.24 0.49 -0.42 -1.25 0.29 1.2
-2.87 -0.08 -0.24 -0.11 1.52 -1.56 -0.64 -0.9 0.02 -0.15 -0.48 -1.67 0.98 -2.79 -4.07 -0.29 -0.52 1.33 -0.26 -0.64 -0.31 0.39 0.19 1.45 0.54 -0.08 0.6 0.85 -2.87 -1.8
- - - - - - - - - - - - - - - - - - - - - - - 4.91 - - - - - -
- - 2.03 -0.34 - - - - 1.09 - 1.7 1.05 1.16 - - - - -0.6 - - 0.17 -0.64 - 2.81 - -0.53 1.03 1.32 - -0.45
-0.77 0.75 -0.5 -0.51 -1.86 -1.04 0.06 -0.86 -0.53 -1.64 0.08 -1.73 1.83 1.25 -1.9 0.56 -1.62 -1.97 - 0.16 0.5 -0.85 -0.18 1.51 -0.29 0.51 -0.49 -1.85 0.52 0.88
0.71 2.73 0.69 - - - - - - -0.4 - - - - - - - 2.17 0.29 - - - - 2.28 1.49 -0.4 1.4 0.84 -0.3 -
1.7 1.55 - 2.99 - - - - - - - - - - - 2.58 - - - - 1.36 - - 2.88 - - - - - -
1.77 2.57 - - 1.19 - - - 1.49 - - - - - - - - - - 2.34 - - - 3.39 - - - - - -
- - 2.99 - - - - - - - - - - - - - - - - - - - - 3.82 - - 2.99 - - -
- - - - - - - - - - - - - - - 3.74 - - - - - 2.03 - 3.65 - - - - - -
- - - - - - - - 0.82 - - - - 0.88 - 2.06 0.76 2.3 - - - - - 3.13 - 0.6 - - 1.34 1.5
- - - - - - - - - - - - - - - - - - - - - - - 4.91 - - - - - -
Spov3_chr4.01829 (SWEET10)
- - - - - - - - - - - - - - - - - - - - - - - 4.91 - - - - - -
0.16 0.13 -0.33 0.24 0.79 -0.61 -0.21 -1.03 -2.4 -2.4 -0.2 1.14 0.2 0.71 -0.04 0.3 -0.12 -1.63 -0.4 0.09 -1.96 -0.3 0.06 1.63 -0.54 -1.7 -1.02 0.59 0.51 -0.11
- 2.22 - 1.2 - - - - 1.41 - - - 2.76 - - 2.23 - - - - - - - 2.64 - - - - - 1.43
-0.14 -1.66 -0.74 - 0.1 -0.92 0.27 - - - -0.66 -1.82 0.38 - 0.15 0.81 -0.71 1.23 - -0.87 0.82 1.34 1.77 1.96 -0.71 0.51 0.84 0.1 -1.76 -
0.39 0.17 -0.26 0.02 0.04 -0.8 -1.17 0.47 -0.29 0.11 -0.06 -0.59 0.47 0.2 -0.18 -0.37 -0.34 0.07 -0.31 -0.15 -0.77 -0.75 -0.13 0.24 -0.17 -0.21 0.01 0.78 0.71 0.71
0.35 - 1.09 - 1.23 0.09 - - 1.19 - - 1.77 - - 0.09 1.25 - - - - - - - 2.46 - 0.97 - 1.48 1.93 -
- 1.52 - - 1.4 - - 2.44 - - 1.76 - - - - - 1.45 - - - - - - 3.07 - - - - - 2.19
0.97 0.36 1.08 0.31 0.24 -1.87 -0.59 -0.02 0.71 0.18 -0.02 -1.0 0.29 -0.73 -0.84 -0.59 -1.81 -1.91 0.15 -0.92 0.79 -2.0 - 0.01 0.85 -0.17 -0.99 1.06 0.99 -0.85
- 2.7 - - - - - - - - - - - - 1.5 - - - - - - - - 3.08 - - 2.42 2.78 - -
-0.05 0.48 -0.01 0.21 -0.15 -0.59 -0.17 -0.43 0.04 0.29 -0.19 0.12 -0.17 -0.48 0.22 0.06 -0.27 0.37 -0.13 -0.61 0.06 0.05 -0.34 0.38 0.47 0.51 -0.21 -0.05 0.22 -0.76
Spov3_chr5.02709 (ROPGEF5)
- - - - - - - - - - - - - - - - - 3.85 - - - - - 3.97 - - - - - -
- - - - - - - - - -21.58 - - - - - - - - - - - - - 4.56 - 2.69 - - - -
- - - - - - - - - - - - - - - - - - - - - - - 4.91 - - - - - -
- - - - - - - - - - - - - - - - - - - - - - - 4.91 - - - - - -
- - - - - - - - - - - - - - - - - - - - - - - 4.91 - - - - - -
- - - - - - - - - - - - - - - - - - - - - - - 4.91 - - - - - -
- - - - - - - - - - - - - - - - - - - - - - - 4.91 - - - - - -
3.32 - - - - - - - - - - 1.13 - - - 2.18 - - - - - - 2.58 2.31 - - - - - 1.21
-0.62 0.18 -0.9 0.25 0.15 -0.44 -0.2 -0.3 0.6 0.53 -0.77 -0.48 0.64 0.38 0.67 0.97 0.47 1.0 -1.14 -1.59 -0.52 -0.48 -1.65 -0.15 0.16 -0.68 -0.16 -0.59 0.27 -0.03
- - - - 1.66 0.69 1.01 - - - - - - 0.71 2.71 1.82 - - - 2.27 1.79 - - 0.73 - - 0.66 - - -
- - - - - - 1.28 0.38 - - - - 2.85 1.52 - - - - - 0.3 2.11 1.31 - 2.76 0.5 - - - - -
- - - - - - 2.15 - - - - - - - - - - - - - - - - 4.68 - - - - - -
- - - - - - - - - - - - 2.37 1.14 2.62 - - - 1.18 2.65 - - - 2.03 - - - 1.07 - 0.81
0.4 0.01 0.16 0.1 -0.43 -0.14 -0.13 0.19 -0.56 0.21 -0.02 -0.19 0.62 -0.41 0.34 -0.12 -0.24 0.3 -1.03 -0.85 -0.57 -0.03 -0.29 0.04 0.12 0.14 0.03 0.23 0.51 0.22
-0.88 -0.61 0.08 0.12 -0.19 0.09 -1.02 0.56 -0.19 -0.27 0.17 0.36 -0.63 -0.54 0.09 0.67 0.47 0.98 -0.7 -1.12 0.27 -0.51 -0.07 0.23 0.07 -0.34 -0.13 0.45 0.2 -0.15
-0.11 0.21 -0.02 0.11 -0.07 -0.07 0.06 -0.04 0.08 0.12 -0.04 -0.01 0.03 0.07 0.22 -0.11 0.15 0.35 -0.56 -0.65 -0.13 0.05 -0.18 -0.16 0.25 -0.06 0.31 0.42 -0.12 -0.74
Spov3_S06.00009 (AtPMT2)
- - - - - - - - - - - - - - - - - 3.84 - 1.83 - - 2.17 2.94 - - - - - -
0.48 - - - - - 0.19 - 1.4 - - - - - - - - 3.63 - - - 1.91 - 2.87 - - - - - 0.4
- 2.84 - 0.81 - - - - - 1.78 - - - - - - - 1.57 - - 0.73 - 0.67 2.94 - - 0.82 1.0 - -
3.17 - - - - 1.98 - - - - - - - - - 2.3 - - - - - - - 3.6 - - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.