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  5. Spov3_C0014.00030

Spov3_C0014.00030 (ROPGEF5, ATROPGEF5)


Aliases : ROPGEF5, ATROPGEF5

Description : not classified


Gene families : OG0000001 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000001_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Spinacia oleracea (Sol) PCC: Spov3_C0014.00030
Cluster Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_27

Target Alias Description ECC score Gene Family Method Actions
Spov3_C0002.00164 UMAMIT3 not classified 0.05 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0003.00140 MCTP7 not classified 0.06 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0005.00040 AtAVT3 not classified 0.08 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0006.00101 UMAMIT9 not classified 0.06 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0015.00022 No alias not classified 0.06 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0016.00052 PIR121, ATSRA1,... not classified 0.06 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0038.00017 PrimPol not classified 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0051.00012 No alias not classified 0.06 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0114.00004 No alias not classified 0.07 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0211.00003 AtSAM2, SAM-2, MAT2, SAM2 not classified 0.06 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0422.00002 No alias not classified 0.06 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0633.00001 No alias not classified 0.07 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_S01.00069 No alias not classified 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_S03.00041 PHR2 not classified 0.06 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_S04.00054 CARD1, HPCA1 not classified 0.05 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_S07.00050 No alias not classified 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_S07.00087 UMAMIT9 not classified 0.06 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_S07.00089 FUS4, FUS8,... not classified 0.05 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_S09.00011 No alias not classified 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_S14.00020 No alias not classified 0.05 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.01899 AFB5 not classified 0.05 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.02624 AGD15 not classified 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.03115 No alias not classified 0.06 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.03160 No alias not classified 0.06 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.04402 BOR5 not classified 0.06 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.01140 bHLH096, bHLH96 not classified 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.02655 KAN3 not classified 0.06 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.02918 No alias not classified 0.05 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.02920 No alias not classified 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.03763 No alias not classified 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.04137 CHR23, AtCHR23 not classified 0.06 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.04139 No alias not classified 0.08 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.05709 ATL51 not classified 0.06 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.00175 No alias not classified 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.00176 ROXY17, GRXS6 not classified 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.00422 ATFIB1, FBR1,... not classified 0.06 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.00488 No alias not classified 0.06 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.01083 No alias not classified 0.06 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.01699 No alias not classified 0.06 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.01877 AtACER, ATCES1 not classified 0.09 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.01950 SAR1, NUP160, ATNUP160 not classified 0.08 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.01956 ROPGEF5, ATROPGEF5 not classified 0.06 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.01993 No alias not classified 0.05 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.01999 No alias not classified 0.06 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.02244 FUS4, FUS8,... not classified 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.02969 ROXY20 not classified 0.05 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr4.00088 LecRK-S.7 not classified 0.07 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr4.00217 DML3 not classified 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr4.00596 ROPGEF5, ATROPGEF5 not classified 0.06 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.02343 No alias not classified 0.07 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.02927 MS188, AtMYB103,... not classified 0.05 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.03189 No alias not classified 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.03195 No alias not classified 0.08 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.04079 No alias not classified 0.08 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.04199 No alias not classified 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr6.02364 No alias not classified 0.05 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr6.02458 No alias not classified 0.05 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr6.02475 HMGB1, AtHMGB1, NFD1 not classified 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr6.02548 No alias not classified 0.05 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr6.02812 No alias not classified 0.07 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr6.02956 No alias not classified 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr6.03031 No alias not classified 0.06 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr6.03194 No alias not classified 0.06 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr6.03197 No alias not classified 0.05 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0003735 structural constituent of ribosome IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0003954 NADH dehydrogenase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0003955 NAD(P)H dehydrogenase (quinone) activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0005198 structural molecule activity IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0005575 cellular_component IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0005840 ribosome IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006139 nucleobase-containing compound metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006163 purine nucleotide metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006164 purine nucleotide biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006351 DNA-templated transcription IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006412 translation IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006518 peptide metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006725 cellular aromatic compound metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006753 nucleoside phosphate metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006754 ATP biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006807 nitrogen compound metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0007275 multicellular organism development IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0008152 metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0009055 electron transfer activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0009058 biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0009059 macromolecule biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0009117 nucleotide metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0009141 nucleoside triphosphate metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0009150 purine ribonucleotide metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0009152 purine ribonucleotide biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0009165 nucleotide biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0009259 ribonucleotide metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0009260 ribonucleotide biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0009987 cellular process IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0015399 primary active transmembrane transporter activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0015453 oxidoreduction-driven active transmembrane transporter activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0015977 carbon fixation IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0015986 proton motive force-driven ATP synthesis IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0016070 RNA metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016779 nucleotidyltransferase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016984 ribulose-bisphosphate carboxylase activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0018130 heterocycle biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0019438 aromatic compound biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0019693 ribose phosphate metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0022804 active transmembrane transporter activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0032501 multicellular organismal process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0032774 RNA biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0034062 5'-3' RNA polymerase activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0034220 monoatomic ion transmembrane transport IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0034357 photosynthetic membrane IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0034641 cellular nitrogen compound metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0042651 thylakoid membrane IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0043043 peptide biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0043170 macromolecule metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0043226 organelle IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0043228 non-membrane-bounded organelle IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0043229 intracellular organelle IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0043603 amide metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0043604 amide biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0044237 cellular metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0044238 primary metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0044249 cellular biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0046034 ATP metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0046390 ribose phosphate biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0046483 heterocycle metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0051536 iron-sulfur cluster binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0051540 metal cluster binding IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0071704 organic substance metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0072521 purine-containing compound metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0072522 purine-containing compound biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0090407 organophosphate biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0097747 RNA polymerase activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0098655 monoatomic cation transmembrane transport IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0098660 inorganic ion transmembrane transport IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0098662 inorganic cation transmembrane transport IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0110165 cellular anatomical entity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:1901135 carbohydrate derivative metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:1901137 carbohydrate derivative biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:1901293 nucleoside phosphate biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:1901360 organic cyclic compound metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:1901362 organic cyclic compound biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:1901564 organonitrogen compound metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:1901566 organonitrogen compound biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:1901576 organic substance biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:1902600 proton transmembrane transport IEP Spinacia oleracea GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR005162 Retrotrans_gag_dom 138 231
No external refs found!