Heatmap: Cluster_27 (Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log₂ transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene	Light: 260 uE m-2 s-1	Light: 195 uE m-2 s-1	Light: 130 uE m-2 s-1 (Control)	Light: 65 uE m-2 s-1	Photoperiod: L24	Photoperiod: L18D6	Photoperiod: L13D11 (Control)	Photoperiod: L8D16	RBW: 4:1:1 (Control)	RBW: 4:1:0	RBW: 3:1:1	RBW: 3:1:0	Nitrogen: 0%	Nitrogen: 25%	Nitrogen: 50%	Nitrogen: 100% (Control)	Nitrogen: 150%	Phosphorous: 0%	Phosphorous: 25%	Phosphorous: 50%	Phosphorous: 100% (Control)	Phosphorous: 150%	Potassium: 0%	Potassium: 25%	Potassium: 50%	Potassium: 100% (Control)	Potassium: 150%	Temperature: 20°C (Control)	Temperature: 25°C	Temperature: 30°C
Spov3_C0002.00209	-	-	-	-	-	-	-	-	-	-	-	-	3.44	-	-	-	-	-	-	3.24	-	-	-	-	-	3.28	-	-	-	-
Spov3_C0014.00030 (ROPGEF5)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.59	-	-	2.57	-	-	-	-	-	-	-
Spov3_C0015.00038 (KIB2)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.91	-	-	-	-	-	-	-	-	-	-
Spov3_C0021.00013 (CYR1)	1.97	-	-0.08	-0.44	-	0.67	0.77	-	-	-	-0.03	-	-	-	2.03	0.98	0.7	-	-0.49	-0.36	-0.23	-	-0.29	1.28	-0.2	-	-	1.06	1.97	-
Spov3_C0048.00011 (RPOB)	-1.78	-0.11	0.44	-0.05	-1.48	0.41	-0.46	1.09	-1.65	0.64	0.72	-1.66	0.22	-0.9	1.17	-2.31	-0.86	0.15	-0.32	1.31	-0.29	-0.84	-0.57	0.36	-0.08	-1.2	-1.48	0.56	-0.63	0.83
Spov3_C0054.00008 (SMXL2)	-	-	-	-	2.68	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.53	-	-	-	-	-	-	2.52	-	-	2.66
Spov3_C0091.00007 (RPOC1)	0.03	-0.26	0.26	0.03	-0.69	-0.67	-0.63	-0.17	0.02	-0.38	0.07	-0.13	0.13	-0.01	0.2	0.02	-0.4	0.86	0.68	1.2	-1.41	-0.75	-0.18	0.28	0.3	0.28	-0.4	-0.46	0.01	-0.62
Spov3_C0091.00035 (RPS11)	-0.22	-0.69	-1.73	0.5	-1.12	-0.82	-0.3	0.37	0.12	0.47	-0.47	-0.19	-0.02	-3.3	-0.01	0.37	-0.08	0.87	-0.15	1.45	-0.26	-0.65	-0.86	0.37	0.63	0.55	-0.06	-1.03	-0.01	0.09
Spov3_C0091.00036 (RPOA)	-0.44	-0.58	0.38	0.12	-0.68	-0.78	-0.26	0.23	-0.07	0.43	0.16	-0.55	0.12	-0.16	-0.15	-0.1	-0.91	0.83	0.46	1.49	-1.11	-0.16	0.18	-0.2	-0.49	-0.44	0.42	-0.37	0.03	-0.68
Spov3_C0091.00037 (RPOA)	-0.44	-0.58	0.38	0.12	-0.68	-0.78	-0.26	0.23	-0.07	0.43	0.16	-0.55	0.12	-0.16	-0.15	-0.1	-0.91	0.83	0.46	1.49	-1.11	-0.16	0.18	-0.2	-0.49	-0.44	0.42	-0.37	0.03	-0.68
Spov3_C0097.00004	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.91	-	-	-	-	-	-	-	-	-	-
Spov3_C0152.00001 (TIC100)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.91	-	-	-	-	-	-	-	-	-	-
Spov3_C0297.00001 (MATK)	-0.28	-0.7	-0.12	0.22	-0.66	-0.67	-0.11	0.01	0.13	-0.46	0.22	-0.29	-0.04	-0.94	-0.13	-0.41	-0.47	-0.53	0.81	1.7	0.19	-0.45	0.5	0.07	0.28	0.29	0.37	-0.23	-1.27	-0.84
Spov3_C0412.00005 (RPL16)	-0.21	-0.78	-0.47	0.42	-0.33	-0.54	0.0	0.01	-0.57	0.11	0.56	-0.56	0.74	-0.75	-0.78	0.29	0.19	0.27	0.34	1.17	0.01	-0.75	0.18	-0.13	0.03	-0.06	0.49	-0.44	-0.39	-0.68
Spov3_C0412.00006 (RPL16)	-0.21	-0.78	-0.47	0.42	-0.33	-0.54	0.0	0.01	-0.57	0.11	0.56	-0.56	0.74	-0.75	-0.78	0.29	0.19	0.27	0.34	1.17	0.01	-0.75	0.18	-0.13	0.03	-0.06	0.49	-0.44	-0.39	-0.68
Spov3_C0412.00009 (RPS11)	-0.22	-0.69	-1.73	0.5	-1.12	-0.82	-0.3	0.37	0.12	0.47	-0.47	-0.19	-0.02	-3.3	-0.01	0.37	-0.08	0.87	-0.15	1.45	-0.26	-0.65	-0.86	0.37	0.63	0.55	-0.06	-1.03	-0.01	0.09
Spov3_C0412.00012 (PSBB)	0.46	-1.78	-0.17	0.13	0.09	-0.64	-0.12	-0.15	0.11	0.2	0.75	0.01	0.65	-0.28	-0.37	-0.76	-0.76	0.77	0.06	1.17	-1.29	-0.85	-0.13	0.17	0.26	0.48	0.33	-0.88	-0.96	-0.58
Spov3_C0414.00005 (YCF2.2)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.91	-	-	-	-	-	-	-	-	-	-
Spov3_C0709.00001 (AKR4C11)	-	-	-	-	-	-	-	-	2.17	-	1.51	-	-	-	-	0.28	-	1.5	-	2.28	-	1.33	-	-0.6	-	1.64	-	2.16	1.58	-
Spov3_C1076.00004 (bHLH60)	-0.79	-2.67	0.66	-0.74	-0.21	-1.57	-0.93	-0.81	0.03	-0.24	-0.67	0.5	-0.27	0.36	0.32	0.08	-0.13	1.0	0.09	1.04	0.16	-0.33	0.62	0.9	0.15	0.18	-0.68	0.24	0.09	-
Spov3_C1321.00007 (RPOA)	-2.81	-1.38	-0.48	-0.65	-1.05	-1.07	0.85	-0.22	0.22	0.82	-0.86	0.54	0.23	-3.66	-0.46	-0.88	-1.34	1.72	-0.17	1.88	-0.05	-1.31	0.32	-0.3	0.24	0.38	0.4	-0.73	-1.54	-0.72
Spov3_chr1.00461	-	-	-	-	2.04	-	0.29	-	2.03	-	0.65	-	0.63	0.63	-	1.53	-	0.31	-	2.35	0.45	-	-	-	-	-	0.11	0.47	0.58	0.43
Spov3_chr1.00938	0.58	0.58	-	0.78	-	-1.26	0.79	0.97	-0.22	-0.06	-0.03	-0.17	-	0.9	1.09	-1.06	-1.25	-	-0.01	-	-	-1.38	-0.23	1.31	-0.2	0.31	0.82	-	1.64	-0.17
Spov3_chr1.00965 (AP1)	-	-	2.11	-	-	-	-	-	1.93	-	-	-	1.04	-	-	-	2.11	1.82	-	2.48	-	-	-	-	-	-	0.86	1.29	-	1.08
Spov3_chr1.01086	0.84	-	-	-	-	1.53	0.5	0.86	-	-	-	-	-	0.69	0.61	0.88	-	0.48	-	2.87	-	-	-	0.87	-	-	-	-	-	2.72
Spov3_chr1.01381	-	-	-	-	-	-	-	-	-	-	-	-	3.0	-	-	-	-	-	-	-	-	-	2.78	-	-	2.84	-	-	2.99	-
Spov3_chr1.01747 (RALFL22)	-	-	-	-	2.82	-	-	-	-	-	-	-	-	-	-	-	-	3.15	-	2.25	-	-	-	-	1.21	-	1.12	-	-	2.26
Spov3_chr1.02028 (RPS18)	-0.16	-1.03	-2.31	-0.27	-1.5	-1.58	-0.48	-0.15	-0.15	-0.46	0.31	0.12	0.4	-1.61	-0.22	-0.23	-0.19	0.75	0.48	1.82	0.32	0.08	-0.71	0.62	0.69	0.29	0.29	-1.01	-0.63	-0.31
Spov3_chr1.02185 (VLN1)	1.04	0.1	-	0.07	-0.28	0.89	-	-	1.92	-	-	1.52	-	0.14	-0.12	-	1.14	-	-	2.46	-	-	-0.06	-	-	-	-	1.85	1.12	-
Spov3_chr1.03008 (CKB3)	-	-	-	-	-	-	-	3.09	-	-	-	-	-	-	-	-	-	-	-	3.85	-	-	-	-	-	-	-	-	2.82	-
Spov3_chr1.03026	1.0	-0.0	0.94	-	1.06	-	-	-	-	-	-	1.09	-	-	1.53	1.49	0.3	0.89	-	2.36	-	-	0.33	-	-	0.83	-	0.94	-	1.01
Spov3_chr1.03200 (ING1)	-	-	-	-	-	-	-	-	3.92	-	-	-	-	-	-	-	-	-	-	3.89	-	-	-	-	-	-	-	-	-	-
Spov3_chr1.03539 (MSL8)	-	2.55	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.82	-	-	2.3	-	-	-	-	-	-	2.35
Spov3_chr1.04197 (PAP27)	-	-	2.78	-	2.61	-	-	-	-	-	-	-	-	-	-	-	-	2.46	-	3.53	-	-	-	-	-	-	-	-	-	-
Spov3_chr1.04796 (RPS12)	-1.19	-2.02	-	-2.33	-1.42	-	-1.17	-2.27	-1.24	-	-	-	-0.63	-0.27	-	0.13	-0.35	-	-2.26	4.42	-2.34	-2.65	-	-	-0.89	-0.67	-0.2	-	-	-1.52
Spov3_chr2.01732 (PMH1)	-	-	-	-	-0.77	-	-	-	-	-	-	-	-	-	-	2.44	-	-	-	2.59	-	-	-	2.98	-	1.72	-	-	2.76	-
Spov3_chr2.01933 (AtGLYI6)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.73	-	-	-	-	4.06	-	-	-	-	-	-	-	-	-	-
Spov3_chr2.05717 (MUS81)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.91	-	-	-	-	-	-	-	-	-	-
Spov3_chr3.00184 (SAP7)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.91	-	-	-	-	-	-	-	-	-	-
Spov3_chr3.00873 (RH2)	1.26	-	-	-	0.07	-	2.04	-	-	-	0.3	-	0.18	-	1.67	-	1.29	-	1.74	-	-	1.02	-	1.19	-	0.19	1.8	-	0.1	0.17
Spov3_chr3.02282 (WEX)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.91	-	-	-	-	-	-	-	-	-	-
Spov3_chr3.02426	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.91	-	-	-	-	-	-	-	-	-	-
Spov3_chr3.03276 (BRH1)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.8	-	-	4.01	-
Spov3_chr4.00527 (YCF1.2)	0.01	-1.01	-	-0.35	-	-0.14	0.79	-	1.16	0.33	-	-0.07	-0.75	-0.21	0.86	0.64	-0.85	-0.53	0.85	2.12	1.25	-1.09	-	-1.76	-0.26	0.56	0.26	-0.25	-2.03	-0.59
Spov3_chr4.00978 (MFT)	-	-	2.46	-	-	-	-	-	-	-	-	-	-	2.57	-	-	2.81	-	-	3.53	-	-	-	-	-	-	-	-	-	-
Spov3_chr4.01489 (PDP3)	-	-	-	-	3.81	-	-	-	-	-	-	-	-	-	-	-	-	-	1.58	3.7	-	-	-	-	-	-	-	-	-	-
Spov3_chr4.01803	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.91	-	-	-	-	-	-	-	-	-	-
Spov3_chr4.02053 (SCRM)	-	-	-	-	-	-	-	-	-	-0.33	-	-	-	0.72	2.71	-	2.15	-	-	3.12	-	-	-	-	-	-	-	-0.3	2.82	-
Spov3_chr4.02341 (MRU1)	0.08	0.19	0.65	-0.03	-0.42	-0.01	0.2	-0.26	0.39	0.02	0.22	0.33	-1.21	0.03	-0.17	-0.83	-0.56	-1.76	0.24	1.44	-0.35	0.58	-0.97	-0.22	-0.59	-0.43	0.07	0.74	-0.05	-1.95
Spov3_chr4.02342	-0.21	0.01	0.19	-0.17	-0.47	0.04	0.43	0.11	0.28	0.38	-0.2	0.39	-0.9	0.22	0.05	-0.33	-0.37	-1.81	0.58	1.78	-0.44	0.1	-2.17	-0.14	-0.71	-0.2	-0.31	0.51	-0.31	-2.04
Spov3_chr4.03461 (B120)	-	-	2.34	-	-	-	-	-	-	-	-	1.35	-	-	1.33	-	-	1.27	-	2.89	-	-	2.37	2.29	-	-	-	-	-	-
Spov3_chr5.00033	2.15	-0.67	1.24	0.06	-1.01	-2.22	-	-	-	-1.98	-1.98	-2.19	-	-	-	-	-	-1.99	-	3.53	-	-	-1.01	-	-	-	-	1.79	1.77	-0.16
Spov3_chr5.00176 (PSBA)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.91	-	-	-	-	-	-	-	-	-	-
Spov3_chr5.00561	-	-0.53	-0.13	-	-	-	-	-	0.13	-0.03	-	0.92	2.23	0.03	0.93	-1.92	-	-11.85	1.6	2.83	-	-	0.92	-	-	-	-	-17.11	2.18	-
Spov3_chr5.01676	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.91	-	-	-	-	-	-	-	-	-	-
Spov3_chr5.02027 (DEK3)	1.53	-	1.75	1.41	-	-0.36	0.68	-0.48	-	-0.16	-	-	0.69	-0.86	1.49	-	-0.22	-1.19	-	1.56	-1.09	0.05	0.55	-0.78	-0.0	0.44	0.34	-	-0.48	-
Spov3_chr5.02168 (LAMP1)	-	-	-	0.5	-0.5	1.43	-0.62	-0.54	1.17	-	-	0.56	-	1.2	0.48	-	-	0.98	-	2.6	0.54	-	2.27	-	-	-0.39	0.39	-	-	-
Spov3_chr5.02667 (PIA1)	1.72	1.31	-	-	-	1.49	-	0.78	1.97	-	-0.13	-	-	-0.32	-	2.27	-	-	-	2.31	-	-	-	-	-	0.53	-0.49	-	-0.34	0.44
Spov3_chr5.02860 (ACT8)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.37	-	-	-	-	-	3.22	-	-	-	-
Spov3_chr5.03385 (UBP23)	1.88	-	0.13	-	0.17	-	-	-	0.49	-	-	0.11	-	0.12	-	-	-	-	1.95	2.68	-	-	-	1.89	-	0.13	2.08	-	-	0.31
Spov3_chr5.03629 (CRC)	0.63	0.69	0.61	0.56	1.48	0.3	0.34	-	-	-	-	-	0.63	-	-	-	-	2.35	2.05	2.71	-	-	-	-	-	0.26	-	-	-	-
Spov3_chr5.04007 (RPL14)	0.01	-1.05	-0.09	0.74	-1.21	-1.64	-1.0	0.65	-1.85	0.36	-0.04	-0.59	-0.12	-0.78	-0.72	-0.32	-0.85	0.83	0.26	1.56	-0.04	-0.19	0.0	0.39	0.03	0.28	0.29	0.09	-0.27	-0.05
Spov3_chr5.04312 (MadA1)	-	0.24	-	-0.08	-	-0.08	0.33	0.24	-	0.1	0.33	-	-	1.16	1.0	1.35	-	0.94	-	2.59	-	-0.08	0.07	0.32	0.1	0.18	-0.02	-	-	0.01
Spov3_chr6.00791 (CUC2)	-	1.8	-	-	-	-	1.39	-	-	-	1.87	-	3.39	-	-	-	-	-	-	2.69	-	-	1.72	-	-	-	-	-	-	-
Spov3_chr6.01268 (GGT2)	-	-	-	-	-	-	-	-	-	-	-	-	1.18	-	-	-	-	2.4	-	3.86	-	-	-	-	-	-	-	-	2.01	1.97
Spov3_chr6.02180 (HB22)	-0.71	-0.65	1.61	0.32	-	-0.88	1.17	0.42	-0.48	-	0.26	-	-0.73	-	1.45	0.93	-	1.4	-0.8	2.65	-0.13	-	-	-	-0.92	-0.0	-	-	-	0.31
Spov3_chr6.02374	-	-	-	0.76	0.94	0.88	0.98	-	-	-	1.16	-	-	-	-	-	-	-	2.32	2.88	-	-	-	-	-	1.06	1.1	-	-	1.91
Spov3_chr6.02590	-9.76	-	-	-	-	-	-	-15.69	-7.01	-	-0.26	-0.32	3.12	-16.15	-	-	0.77	-	-9.48	4.06	-	-	-	-15.81	-	-6.53	-12.65	0.32	-	-7.34
Spov3_chr6.02702 (PEG2)	-	-	-	-	-11.33	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.91	-	-	-	-	-	-	-	-	-	-
Spov3_chr6.02921 (RPL30A)	-	-	-	2.0	-	-	-	-	1.78	-	-	-	-	-	-	-	-	-	-	3.34	-	-	-	-	-	-	-	2.05	3.06	-
Spov3_S01.00113	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.91	-	-	-	-	-	-	-	-	-	-

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.