Spov3_C0008.00099 (TRP1, ATTRP1)

Aliases : TRP1, ATTRP1

Description : not classified

Gene families : OG0002578 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0002578_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Spinacia oleracea (Sol) PCC: Spov3_C0008.00099
Cluster	Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_127

Target	Alias	Description	ECC score	Gene Family Method	Actions
Spov3_chr1.00574	XIK, XI-17, ATXIK, XI-K	not classified	0.01	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.02128	NFRKB1	not classified	0.01	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0000272	polysaccharide catabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0005976	polysaccharide metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009056	catabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009057	macromolecule catabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0016052	carbohydrate catabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016160	amylase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016161	beta-amylase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:1901575	organic substance catabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR025724	GAG-pre-integrase_dom	422	463
IPR001584	Integrase_cat-core	477	554
IPR013103	RVT_2	856	923

External Links

No external refs found!