Spov3_C0006.00040 (GRP9, ATGRP9)

Aliases : GRP9, ATGRP9

Description : not classified

Gene families : OG0000444 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000444_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Spinacia oleracea (Sol) PCC: Spov3_C0006.00040
Cluster	Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_90

Target	Alias	Description	ECC score	Gene Family Method	Actions
Spov3_chr2.01204	No alias	not classified	0.05	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.01521	No alias	not classified	0.08	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	None	Extended
MF	GO:0004521	RNA endonuclease activity	None	Extended
MF	GO:0004523	RNA-DNA hybrid ribonuclease activity	IEA	Interproscan
MF	GO:0004540	RNA nuclease activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016891	RNA endonuclease activity, producing 5'-phosphomonoesters	None	Extended
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0000154	rRNA modification	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0000278	mitotic cell cycle	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0000775	chromosome, centromeric region	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0001510	RNA methylation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0007049	cell cycle	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008170	N-methyltransferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008649	rRNA methyltransferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016436	rRNA (uridine) methyltransferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0031167	rRNA methylation	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0070042	rRNA (uridine-N3-)-methyltransferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0070475	rRNA base methylation	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0098687	chromosomal region	IEP	Spinacia oleracea GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR003656	Znf_BED	34	78
IPR025525	hAT-like_transposase_RNase-H	418	521
IPR008906	HATC_C_dom	570	652
IPR002156	RNaseH_domain	672	739

External Links

No external refs found!