Heatmap: Cluster_90 (Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log₂ transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene	Light: 260 uE m-2 s-1	Light: 195 uE m-2 s-1	Light: 130 uE m-2 s-1 (Control)	Light: 65 uE m-2 s-1	Photoperiod: L24	Photoperiod: L18D6	Photoperiod: L13D11 (Control)	Photoperiod: L8D16	RBW: 4:1:1 (Control)	RBW: 4:1:0	RBW: 3:1:1	RBW: 3:1:0	Nitrogen: 0%	Nitrogen: 25%	Nitrogen: 50%	Nitrogen: 100% (Control)	Nitrogen: 150%	Phosphorous: 0%	Phosphorous: 25%	Phosphorous: 50%	Phosphorous: 100% (Control)	Phosphorous: 150%	Potassium: 0%	Potassium: 25%	Potassium: 50%	Potassium: 100% (Control)	Potassium: 150%	Temperature: 20°C (Control)	Temperature: 25°C	Temperature: 30°C
Spov3_C0002.00113	-	-	-	-	-	-	-	-	4.24	3.48	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Spov3_C0002.00196 (MLO12)	-	-	-	-	-	-	-	-	4.73	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.78
Spov3_C0006.00040 (GRP9)	-	-	1.27	-	1.03	-	-	-	2.96	1.17	-	-	-	-	-	-	1.51	-	1.81	-	1.66	-	-	-	-	-	-	0.93	-	2.04
Spov3_C0006.00089 (AEP4)	-	-	-	-	-	-	-	-	4.91	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Spov3_C0012.00034	-	-0.12	0.81	1.35	1.75	-	-	-	1.14	-0.35	0.78	-0.49	-0.31	2.44	1.54	-	-	-	0.94	-	-	-0.45	-	-0.46	-	-	-	0.03	-	1.31
Spov3_C0022.00010 (PANB1)	-	1.8	-	1.64	-	-	-	-	2.56	1.71	-	-	-	1.47	-	-	-	-	-	-	-	-	-	-	-	-	1.42	-	2.5	1.65
Spov3_C0028.00029	1.49	0.09	0.91	0.16	-4.33	-	-	0.05	2.32	-	-	1.89	0.12	-1.01	-0.76	-13.75	-0.67	-	-	-2.03	-	1.57	0.52	-	2.09	0.68	-	-	-	-10.7
Spov3_C0037.00024	-	-	-	-	-	-	-	-	4.91	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Spov3_C0049.00012	-	-	-	-	-	1.78	-	-	2.95	-	-	-	2.06	2.82	1.82	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2.01
Spov3_C0061.00009 (MYR2)	-	-	-	-	-	-	-	-	4.91	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Spov3_C0491.00012 (STL1)	-	-	-	-	-	-	-	-	4.02	3.79	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Spov3_C0514.00002	-	-	-	-	-	-	-	-	4.91	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Spov3_chr1.00155 (OGOX1)	-	-	-	2.44	-	-	-	-	3.87	-	-	-	-	-	-	-	-	-	-	-	-	-	3.31	-	-	-	-	-	-	-
Spov3_chr1.00551 (ATK4)	0.32	2.45	-	0.01	-0.51	-	-1.56	-0.25	-	-	0.32	0.16	0.17	0.19	1.2	2.4	-0.46	-1.68	-	-	-1.56	-	1.37	0.19	-1.48	-	-0.18	-	-0.06	-0.2
Spov3_chr1.01439	-	-	-	-	-	-	-	-	4.91	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Spov3_chr1.03087	-	-	-	-	-	-	-	-	4.91	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Spov3_chr1.03275 (RLK)	-	-	-	-	-	-	-	-	4.91	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Spov3_chr1.04648 (FAR5)	-	-	-	-	-	-	-	-	4.6	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2.52	-	-	-	-
Spov3_chr2.00986	-	2.71	-	-	2.61	-	2.59	-	3.5	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Spov3_chr2.01605	-	2.29	-	-	-	-	-	-	4.07	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2.02	-	2.08	-	-	-	-
Spov3_chr2.02137 (PAL2)	-	-	-	-	-	-	-	-	4.91	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Spov3_chr2.02228 (CYCB2;4)	1.1	-	-	-	-	-	1.11	-	3.11	-	2.28	-	-	-	-	-	-	-	1.84	-	-	-	-	-	-	-	-	-	2.75	0.94
Spov3_chr2.02274	-0.7	1.43	-0.13	1.61	-0.87	-0.92	-	0.94	-0.58	-1.37	-1.34	-1.67	0.13	1.2	-1.74	-0.64	-0.65	0.83	-1.8	-	-1.79	-	1.09	-1.72	-	0.16	0.11	-1.64	1.76	1.2
Spov3_chr2.03460 (GRF7)	0.92	-	0.65	0.89	-	2.26	1.64	-	3.08	-	-	0.72	-	-	-	1.87	-	-	0.55	-	-	-	-	0.66	-	-	-	-	-	-
Spov3_chr2.03847	-	-	-	-	-	-	-	3.47	4.24	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Spov3_chr2.05383 (ILL3)	-	-	-	-	-	-	-	-	4.28	-	-	-	-	3.4	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Spov3_chr3.00253	-	0.96	-	-	1.39	0.2	1.64	-0.69	2.39	-	1.57	-	-0.48	1.02	0.93	-	-	-	-	0.13	-0.6	-0.63	-	-	-0.75	0.86	-0.49	0.65	-	-0.74
Spov3_chr3.01506	1.15	-	-0.19	2.35	0.94	-	-	0.03	2.42	-	0.07	-0.16	-	-	-	0.41	-	0.76	-	1.24	-	-	-	-	-	-	1.02	-	2.06	-
Spov3_chr3.01661	-	-	-	-	-	-	-	-	4.46	-	-	-	2.99	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Spov3_chr3.02498	-	-	-	-	-	-	-	-	4.91	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Spov3_chr3.03174	1.0	1.11	0.99	1.02	-0.75	-0.13	-2.55	-0.79	-0.47	0.26	-0.42	-0.32	-1.47	1.35	-0.07	-0.12	-1.78	0.07	-	-0.72	-0.38	-	-1.02	-1.1	0.02	-0.81	1.35	0.66	0.52	-1.0
Spov3_chr3.03282	-	-	-	-	-	-	-	-	4.91	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Spov3_chr3.03422 (AGL34)	-	-	-	-	-	-	-	-	4.91	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Spov3_chr3.04872	3.45	-	-	-	-	-	-	-	3.18	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.33	-
Spov3_chr4.00453 (HD2)	-	-	-	-	-	-	-	-	4.91	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Spov3_chr4.01420 (GLIP3)	-	-	-	-	-	-	-	-	4.91	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Spov3_chr4.01725	0.45	0.33	-0.23	-	-0.47	-	-0.32	0.34	0.9	1.08	0.82	-	-1.15	0.8	-0.47	-	-0.41	0.47	-	-	-	0.19	-	0.42	2.14	-	-	1.06	-0.25	1.65
Spov3_chr4.03280 (UBN1)	-0.17	-0.07	-0.17	-0.15	0.03	-0.12	-0.05	-0.02	1.01	-0.21	-0.12	-0.25	0.06	0.34	0.13	0.03	0.02	-0.19	-0.36	-0.32	-0.11	-0.21	0.71	-0.03	-0.12	-0.07	-0.08	-0.18	-0.12	-0.13
Spov3_chr4.03295	-	0.06	-	0.23	1.69	-1.27	-1.22	-0.92	1.51	-1.07	-0.99	-	-0.89	-	-	-	-0.0	1.1	-	-	-1.06	-	0.42	-	-1.19	-	2.29	-0.86	2.28	1.63
Spov3_chr5.00528	1.01	-	-	0.78	-	-	-	-	3.55	-	-	-	-	-	-	1.28	-	-	-	-	1.27	2.08	-	-	-	-	-	-	-	2.46
Spov3_chr5.00529 (WNK2)	0.2	-0.13	-1.02	0.13	0.86	-1.36	-1.17	-2.86	-0.11	-0.53	-0.03	-0.45	-0.29	-1.41	-0.71	-3.76	-1.21	0.05	0.27	0.62	0.28	-0.18	0.62	-1.5	-0.97	-0.5	1.51	0.8	1.48	0.62
Spov3_chr5.02869	-	-	-	1.05	0.7	-	0.81	1.08	3.49	-	-	-	1.01	2.48	1.86	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Spov3_chr5.02909 (PEG9)	-	-	1.57	-	-	-	1.66	-	2.95	-	-	-	1.48	3.39	-	-	-	-	-	-	-	-	-	-	-	1.51	-	-	-	-
Spov3_chr5.03056 (AAE17)	-	-	-	-	-	-	1.85	-	-	-	3.31	2.07	-	3.62	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Spov3_chr5.03217	-	-	-	-	1.92	0.85	-	-	-	-	2.21	-	1.11	3.04	2.52	-	-	0.81	-	-	-	0.95	-	-	-	-	-	-	-	-
Spov3_chr5.03792	1.95	-	-	-	-	-	-	-	3.86	-	-	-	-	-	-	-	-	-	-	-	3.54	-	-	-	-	-	-	-	-	-
Spov3_chr5.04186 (PP2C62)	-	-	-	-	-	-	-	-	4.91	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Spov3_chr5.04279	1.45	-0.25	1.2	0.33	0.51	-0.33	-0.27	1.68	2.06	-	-0.3	-	-	-	-0.58	0.7	0.62	-0.68	-	-0.61	-	-	-	0.37	1.85	-	-0.28	-0.36	-	-
Spov3_chr5.04342 (UMAMIT27)	-	-	-	-	-	-	-	-	4.91	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Spov3_chr6.02019	-	0.61	0.57	-	-	-	-	0.58	0.59	0.3	-	0.2	-	2.89	2.89	-	-	-	0.27	-	-	-	1.87	-	-	-	0.95	-	-	-
Spov3_chr6.02054	1.05	-1.68	0.94	-2.05	1.08	-2.2	-0.78	-	1.83	-0.46	0.08	1.51	1.0	-0.41	-0.63	-	0.25	-0.6	-	-	-	0.38	0.46	-1.28	0.66	-2.24	-0.38	1.1	0.39	-
Spov3_chr6.02730	-	-	-	-	-	-	-	-	3.84	3.06	-	-	-	-	2.88	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Spov3_chr6.02876 (NBR1)	-	-	-	-	-	-	2.14	-	-	-	3.78	-	-	3.57	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Spov3_S06.00037 (ATH7)	0.44	0.51	-0.47	-0.35	0.03	-0.54	-	-0.81	0.32	-0.92	0.45	-1.0	-1.75	0.87	0.96	-	-1.01	1.04	-1.84	-0.53	0.18	-2.15	-0.5	-0.28	0.01	-	0.97	0.72	1.61	0.72
Spov3_S12.00035 (RPL14)	-	2.93	-	2.58	-	-	-	-	3.06	-	-	-	-	-	-	3.01	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Spov3_S12.00056 (MDAR6)	-	-	-	-	-	-	-	-	3.57	-	-	-	-	3.57	-	-	-	-	-	-	-	-	-	-	2.64	-	-	-	-	-
Spov3_S13.00027 (SYTF)	-	-	-	-	-	-	-	-	3.26	-	-	-	-	3.39	3.31	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.