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  5. Spov3_C0005.00012

Spov3_C0005.00012 (APD2)


Aliases : APD2

Description : not classified


Gene families : OG0000109 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000109_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Spinacia oleracea (Sol) PCC: Spov3_C0005.00012
Cluster Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_49

Target Alias Description ECC score Gene Family Method Actions
Spov3_C0005.00052 ABF3, AtABF3, DPBF5 not classified 0.12 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0005.00053 ATROPGEF8, ROPGEF8 not classified 0.12 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0011.00038 No alias not classified 0.05 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0038.00014 No alias not classified 0.08 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_S01.00050 DJC62, TPR15 not classified 0.1 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_S03.00013 CRK, ARPC5 not classified 0.15 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_S03.00095 IQD12 not classified 0.07 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_S04.00016 AtTRM140a, TRM140a not classified 0.08 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_S09.00009 CRK, ARPC5 not classified 0.1 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.02009 ROT3 not classified 0.1 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.04366 MS188, AtMYB103,... not classified 0.09 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.02131 ATPP2-A3, PP2-A3, IAN10 not classified 0.09 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006508 proteolysis IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0008107 galactoside 2-alpha-L-fucosyltransferase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0008233 peptidase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0008234 cysteine-type peptidase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0008417 fucosyltransferase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0031127 alpha-(1,2)-fucosyltransferase activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0042546 cell wall biogenesis IEP Spinacia oleracea GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR005162 Retrotrans_gag_dom 170 260
No external refs found!