Lsat_1_v5_gn_9_83701.1 (HY8, FRE1, FHY2, PHYA)

Aliases : HY8, FRE1, FHY2, PHYA

Description : phytochrome photoreceptor *(PHY)

Gene families : OG0007528 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_9_83701.1
Cluster	Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_48

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009581	detection of external stimulus	None	Extended
BP	GO:0009582	detection of abiotic stimulus	None	Extended
BP	GO:0009583	detection of light stimulus	None	Extended
BP	GO:0009584	detection of visible light	IEA	Interproscan
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051606	detection of stimulus	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000775	chromosome, centromeric region	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0005509	calcium ion binding	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0005634	nucleus	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0007059	chromosome segregation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0008104	protein localization	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0015031	protein transport	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0017119	Golgi transport complex	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0022402	cell cycle process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0022414	reproductive process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0033036	macromolecule localization	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0043167	ion binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0043169	cation binding	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0043226	organelle	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0043227	membrane-bounded organelle	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0043229	intracellular organelle	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0043531	ADP binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0045132	meiotic chromosome segregation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0045184	establishment of protein localization	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0046872	metal ion binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0051641	cellular localization	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0070727	cellular macromolecule localization	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0098687	chromosomal region	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0098813	nuclear chromosome segregation	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0099023	vesicle tethering complex	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:1903046	meiotic cell cycle process	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR013515	Phytochrome_cen-reg	306	481
IPR003594	HATPase_C	898	1008
IPR003018	GAF	114	293
IPR013767	PAS_fold	642	764
IPR013767	PAS_fold	512	626
IPR013654	PAS_2	15	80

External Links

No external refs found!

Lsat_1_v5_gn_9_83701.1 (HY8, FRE1, FHY2, PHYA)

Expression Profile

Co-expression Networks

Functional Annotation