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  5. Lsat_1_v5_gn_9_79920.1

Lsat_1_v5_gn_9_79920.1 (PNH, AGO10, ZLL)


Aliases : PNH, AGO10, ZLL

Description : miRNA recruiting factor (AGO) of RNA-induced silencing complex (RISC) assembly


Gene families : OG0005313 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0005313_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_9_79920.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_228


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006355 regulation of DNA-templated transcription IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008094 ATP-dependent activity, acting on DNA IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009605 response to external stimulus IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009606 tropism IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009889 regulation of biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0010274 hydrotropism IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0010468 regulation of gene expression IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0019222 regulation of metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0031323 regulation of cellular metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0031326 regulation of cellular biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0050896 response to stimulus IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0051252 regulation of RNA metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0060255 regulation of macromolecule metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0080090 regulation of primary metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140110 transcription regulator activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:2001141 regulation of RNA biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR003165 Piwi 621 939
IPR032474 Argonaute_N 137 270
IPR032472 ArgoL2 472 518
IPR014811 ArgoL1 280 329
IPR032473 Argonaute_Mid_dom 529 606
IPR003100 PAZ_dom 355 462
No external refs found!