Lsat_1_v5_gn_9_78721.1 (BBC1, RSU2, ATBBC1)

Aliases : BBC1, RSU2, ATBBC1

Description : component *(eL13) of large ribosomal-subunit (LSU) proteome

Gene families : OG0002403 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0002403_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_9_78721.1
Cluster	Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_90

Target	Alias	Description	ECC score	Gene Family Method	Actions
Lsat_1_v5_gn_9_79140.1	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU) proteome	0.02	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003876	AMP deaminase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004176	ATP-dependent peptidase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004506	squalene monooxygenase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004527	exonuclease activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0005096	GTPase activator activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006188	IMP biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006413	translational initiation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008047	enzyme activator activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008146	sulfotransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008234	cysteine-type peptidase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009123	nucleoside monophosphate metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009124	nucleoside monophosphate biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009126	purine nucleoside monophosphate metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009127	purine nucleoside monophosphate biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009156	ribonucleoside monophosphate biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009161	ribonucleoside monophosphate metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009167	purine ribonucleoside monophosphate metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009168	purine ribonucleoside monophosphate biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0009512	cytochrome b6f complex	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016709	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016814	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0019239	deaminase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0030127	COPII vesicle coat	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0032261	purine nucleotide salvage	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0032264	IMP salvage	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0043094	cellular metabolic compound salvage	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0043101	purine-containing compound salvage	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0043173	nucleotide salvage	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0046040	IMP metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0047623	adenosine-phosphate deaminase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0070069	cytochrome complex	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0106380	purine ribonucleotide salvage	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0140677	molecular function activator activity	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR001380	Ribosomal_eL13	7	184

External Links

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Lsat_1_v5_gn_9_78721.1 (BBC1, RSU2, ATBBC1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation