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  5. Lsat_1_v5_gn_9_46521.1

Lsat_1_v5_gn_9_46521.1 (HMGB3, NFD03, NFD3)


Aliases : HMGB3, NFD03, NFD3

Description : DNA bending architectural protein *(HMG-B)


Gene families : OG0000318 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000318_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_9_46521.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_39

Target Alias Description ECC score Gene Family Method Actions
Lsat_1_v5_gn_2_111060.1 HMGB3, NFD03, NFD3 DNA bending architectural protein *(HMG-B) 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_3_130281.1 CYP71, AtCYP71 DNA bending architectural protein *(HMG-B) 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_8_87461.1 HMGB3, NFD03, NFD3 DNA bending architectural protein *(HMG-B) 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003872 6-phosphofructokinase activity IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0005886 plasma membrane IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008443 phosphofructokinase activity IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0009579 thylakoid IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0010257 NADH dehydrogenase complex assembly IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0010258 NADH dehydrogenase complex (plastoquinone) assembly IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0010275 NAD(P)H dehydrogenase complex assembly IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0015979 photosynthesis IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0019200 carbohydrate kinase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0044183 protein folding chaperone IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140662 ATP-dependent protein folding chaperone IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR009071 HMG_box_dom 35 104
No external refs found!