Lsat_1_v5_gn_9_39040.1 (TRM8)

Aliases : TRM8

Description : not classified

Gene families : OG0000115 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000115_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_9_39040.1
Cluster	Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_46

Target	Alias	Description	ECC score	Gene Family Method
Lsat_1_v5_gn_4_106941.1	No alias	not classified	0.02	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_5_95781.1	PETB	not classified	0.02	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_9_119901.1	No alias	not classified	0.02	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
BP	GO:0006508	proteolysis	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0008234	cysteine-type peptidase activity	IEA	Interproscan
MF	GO:0016787	hydrolase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000096	sulfur amino acid metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0000097	sulfur amino acid biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003871	5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003883	CTP synthase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004089	carbonate dehydratase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0005516	calmodulin binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006555	methionine metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008172	S-methyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009066	aspartate family amino acid metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009067	aspartate family amino acid biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009086	methionine biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0042085	5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR003653	Peptidase_C48_C	716	827

External Links

No external refs found!

Lsat_1_v5_gn_9_39040.1 (TRM8)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation