Lsat_1_v5_gn_8_96601.1

Description : not classified

Gene families : OG0042243 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_8_96601.1
Cluster	Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_104

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006281	DNA repair	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006298	mismatch repair	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0032259	methylation	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0097747	RNA polymerase activity	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR046849	Eplus_motif	571	598
IPR002885	Pentatricopeptide_rpt	119	166
IPR002885	Pentatricopeptide_rpt	219	266
IPR002885	Pentatricopeptide_rpt	387	433
IPR002885	Pentatricopeptide_rpt	285	334
IPR046848	E_motif	506	566
IPR002885	Pentatricopeptide_rpt	361	381
IPR002885	Pentatricopeptide_rpt	61	88
IPR002885	Pentatricopeptide_rpt	462	486
IPR032867	DYW_dom	602	695

External Links

No external refs found!