Lsat_1_v5_gn_8_87461.1 (HMGB3, NFD03, NFD3)


Aliases : HMGB3, NFD03, NFD3

Description : DNA bending architectural protein *(HMG-B)


Gene families : OG0000318 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000318_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_8_87461.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_62

Target Alias Description ECC score Gene Family Method Actions
Lsat_1_v5_gn_2_29280.1 CYP71, AtCYP71 not classified 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_2_43501.1 HMGB1, AtHMGB1, NFD1 not classified 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_9_46521.1 HMGB3, NFD03, NFD3 DNA bending architectural protein *(HMG-B) 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0004177 aminopeptidase activity IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0005739 mitochondrion IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006497 protein lipidation IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006505 GPI anchor metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006506 GPI anchor biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006661 phosphatidylinositol biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006664 glycolipid metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008235 metalloexopeptidase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008519 ammonium transmembrane transporter activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009247 glycolipid biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0015267 channel activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0022803 passive transmembrane transporter activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0046467 membrane lipid biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0046474 glycerophospholipid biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0055085 transmembrane transport IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0070006 metalloaminopeptidase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0072488 ammonium transmembrane transport IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:1903509 liposaccharide metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR009071 HMG_box_dom 35 100
No external refs found!