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  5. Lsat_1_v5_gn_8_65800.1

Lsat_1_v5_gn_8_65800.1 (ATPAB2, PAB2, PABP2)


Aliases : ATPAB2, PAB2, PABP2

Description : mRNA poly-A-tail binding factor *(PABP)


Gene families : OG0000776 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000776_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_8_65800.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_89

Target Alias Description ECC score Gene Family Method Actions
Lsat_1_v5_gn_2_39721.1 ATPAB2, PAB2, PABP2 mRNA poly-A-tail binding factor *(PABP) 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_5_187361.1 ATPAB2, PAB2, PABP2 mRNA poly-A-tail binding factor *(PABP) 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_5_94521.1 PABP8, PAB8 not classified 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_8_45061.1 ATPAB2, PAB2, PABP2 not classified 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0007010 cytoskeleton organization IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008519 ammonium transmembrane transporter activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0072488 ammonium transmembrane transport IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR000504 RRM_dom 180 245
IPR000504 RRM_dom 21 71
IPR000504 RRM_dom 89 157
No external refs found!