Bra007402 (RH52)

Aliases : RH52

Description : sRNA cargo-loading helicase *(RH11/37) of extracellular vesicle trafficking

Gene families : OG0001222 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0001222_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra007402
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_144

Target	Alias	Description	ECC score	Gene Family Method	Actions
Bra003343	RH52	sRNA cargo-loading helicase *(RH11/37) of extracellular...	0.02	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003951	NAD+ kinase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004668	protein-arginine deiminase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004743	pyruvate kinase activity	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0005618	cell wall	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006073	obsolete cellular glucan metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006096	glycolytic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006576	biogenic amine metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006595	polyamine metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006596	polyamine biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006739	NADP metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006741	NADP biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009058	biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009116	nucleoside metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009308	amine metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009309	amine biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009445	putrescine metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009446	putrescine biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016762	xyloglucan:xyloglucosyl transferase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016813	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0019359	nicotinamide nucleotide biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0019362	pyridine nucleotide metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0019363	pyridine nucleotide biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0030312	external encapsulating structure	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0030955	potassium ion binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0031420	alkali metal ion binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0042401	biogenic amine biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0044281	small molecule metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0046496	nicotinamide nucleotide metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0048046	apoplast	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0071705	nitrogen compound transport	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0072524	pyridine-containing compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0072525	pyridine-containing compound biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1901657	glycosyl compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	373	488
IPR011545	DEAD/DEAH_box_helicase_dom	157	338

External Links

No external refs found!

Bra007402 (RH52)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation