Lsat_1_v5_gn_8_1800.1 (RPOB)

Aliases : RPOB

Description : core component *(RpoB) of plastid-encoded RNA polymerase

Gene families : OG0000474 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000474_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_8_1800.1
Cluster	Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_89

Target	Alias	Description	ECC score	Gene Family Method	Actions
Lsat_1_v5_gn_1_92840.1	RPOB	not classified	0.03	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004807	triose-phosphate isomerase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006813	potassium ion transport	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0010215	cellulose microfibril organization	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0015079	potassium ion transmembrane transporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0016043	cellular component organization	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016860	intramolecular oxidoreductase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016861	intramolecular oxidoreductase activity, interconverting aldoses and ketoses	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016984	ribulose-bisphosphate carboxylase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0017004	cytochrome complex assembly	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0030001	metal ion transport	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0030127	COPII vesicle coat	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0030198	extracellular matrix organization	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0032392	DNA geometric change	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0032508	DNA duplex unwinding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0034220	monoatomic ion transmembrane transport	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0043062	extracellular structure organization	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0071805	potassium ion transmembrane transport	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0071840	cellular component organization or biogenesis	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0098655	monoatomic cation transmembrane transport	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0098660	inorganic ion transmembrane transport	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0098662	inorganic cation transmembrane transport	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:1901702	salt transmembrane transporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR007645	RNA_pol_Rpb2_3	111	179
IPR007641	RNA_pol_Rpb2_7	714	789
IPR007642	RNA_pol_Rpb2_2	1	50
IPR007120	DNA-dir_RNAP_su2_dom	316	712

External Links

No external refs found!

Lsat_1_v5_gn_8_1800.1 (RPOB)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation