Lsat_1_v5_gn_8_125820.1

Description : EC_6.1 ligase forming carbon-oxygen bond. glycine-tRNA ligase

Gene families : OG0005571 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0005571_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_8_125820.1
Cluster	Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_218

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006418	tRNA aminoacylation for protein translation	IEA	Interproscan
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043038	amino acid activation	None	Extended
BP	GO:0043039	tRNA aminoacylation	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000159	protein phosphatase type 2A complex	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004363	glutathione synthase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004486	methylenetetrahydrofolate dehydrogenase [NAD(P)+] activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004488	methylenetetrahydrofolate dehydrogenase (NADP+) activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0005215	transporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0005253	monoatomic anion channel activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0005254	chloride channel activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006749	glutathione metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006750	glutathione biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006777	Mo-molybdopterin cofactor biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0008287	protein serine/threonine phosphatase complex	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008509	monoatomic anion transmembrane transporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009058	biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0015079	potassium ion transmembrane transporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0015103	inorganic anion transmembrane transporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0015108	chloride transmembrane transporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0015291	secondary active transmembrane transporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0015297	antiporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016645	oxidoreductase activity, acting on the CH-NH group of donors	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016646	oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016881	acid-amino acid ligase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0019008	molybdopterin synthase complex	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0019184	nonribosomal peptide biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0019720	Mo-molybdopterin cofactor metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0019842	vitamin binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0022804	active transmembrane transporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0022857	transmembrane transporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0030170	pyridoxal phosphate binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0032324	molybdopterin cofactor biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0042910	xenobiotic transmembrane transporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0043545	molybdopterin cofactor metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0051189	prosthetic group metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0051539	4 iron, 4 sulfur cluster binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0070279	vitamin B6 binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0071805	potassium ion transmembrane transport	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:1901702	salt transmembrane transporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:1903293	phosphatase complex	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:1904091	non-ribosomal peptide synthetase activity	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR002314	aa-tRNA-synt_IIb	254	552
IPR004154	Anticodon-bd	579	666
IPR000738	WHEP-TRS_dom	18	58

External Links

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Lsat_1_v5_gn_8_125820.1

Expression Profile

Co-expression Networks

Functional Annotation