Lsat_1_v5_gn_8_112800.1 (GLR3.6, ATGLR3.6)

Aliases : GLR3.6, ATGLR3.6

Description : ligand-gated cation channel *(GLR)

Gene families : OG0003601 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0003601_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_8_112800.1
Cluster	Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_102

Target	Alias	Description	ECC score	Gene Family Method	Actions
Lsat_1_v5_gn_8_112600.1	GLR3.6, ATGLR3.6	ligand-gated cation channel *(GLR)	0.06	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005216	monoatomic ion channel activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
MF	GO:0015075	monoatomic ion transmembrane transporter activity	None	Extended
MF	GO:0015267	channel activity	None	Extended
MF	GO:0015276	ligand-gated monoatomic ion channel activity	IEA	Interproscan
CC	GO:0016020	membrane	IEA	Interproscan
MF	GO:0022803	passive transmembrane transporter activity	None	Extended
MF	GO:0022834	ligand-gated channel activity	None	Extended
MF	GO:0022836	gated channel activity	None	Extended
MF	GO:0022839	monoatomic ion gated channel activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003779	actin binding	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0005576	extracellular region	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0005618	cell wall	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006073	obsolete cellular glucan metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016757	glycosyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016762	xyloglucan:xyloglucosyl transferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0030312	external encapsulating structure	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0046527	glucosyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0048046	apoplast	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR001320	Iontro_rcpt_C	673	705
IPR001638	Solute-binding_3/MltF_N	388	672
IPR001828	ANF_lig-bd_rcpt	6	310

External Links

No external refs found!