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  5. Lsat_1_v5_gn_7_55961.1

Lsat_1_v5_gn_7_55961.1 (PEP)


Aliases : PEP

Description : not classified


Gene families : OG0003323 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0003323_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_7_55961.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_185


Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0000152 nuclear ubiquitin ligase complex IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003697 single-stranded DNA binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0005515 protein binding IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0005643 nuclear pore IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0005680 anaphase-promoting complex IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0017056 structural constituent of nuclear pore IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0046855 obsolete inositol phosphate dephosphorylation IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0140513 nuclear protein-containing complex IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR024752 Myb/SANT-like_dom 386 478
IPR024752 Myb/SANT-like_dom 649 741
IPR024752 Myb/SANT-like_dom 1140 1234
IPR004088 KH_dom_type_1 57 110
IPR004088 KH_dom_type_1 146 214
No external refs found!