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  5. Bra006978

Bra006978 (AtCDC48B)


Aliases : AtCDC48B

Description : platform ATPase CDC48


Gene families : OG0000642 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000642_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa (Bra) PCC: Bra006978
Cluster Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_158


Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATP hydrolysis activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0003006 developmental process involved in reproduction IEP Brassica rapa GO terms from Neighborhoods
MF GO:0003677 DNA binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0003700 DNA-binding transcription factor activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004356 glutamine synthetase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004497 monooxygenase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004601 peroxidase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004866 endopeptidase inhibitor activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0005048 signal sequence binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0005506 iron ion binding IEP Brassica rapa GO terms from Neighborhoods
CC GO:0005576 extracellular region IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006621 protein retention in ER lumen IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006979 response to oxidative stress IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008194 UDP-glycosyltransferase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008200 ion channel inhibitor activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0009055 electron transfer activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009790 embryo development IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009793 embryo development ending in seed dormancy IEP Brassica rapa GO terms from Neighborhoods
MF GO:0010181 FMN binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016209 antioxidant activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016211 ammonia ligase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016247 channel regulator activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016248 channel inhibitor activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016491 oxidoreductase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016829 lyase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016840 carbon-nitrogen lyase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016843 amine-lyase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016844 strictosidine synthase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016849 phosphorus-oxygen lyase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0017080 sodium channel regulator activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0019871 sodium channel inhibitor activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0020037 heme binding IEP Brassica rapa GO terms from Neighborhoods
BP GO:0022414 reproductive process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0030414 peptidase inhibitor activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0032507 maintenance of protein location in cell IEP Brassica rapa GO terms from Neighborhoods
MF GO:0033897 ribonuclease T2 activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP Brassica rapa GO terms from Neighborhoods
MF GO:0042277 peptide binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0043565 sequence-specific DNA binding IEP Brassica rapa GO terms from Neighborhoods
BP GO:0045185 maintenance of protein location IEP Brassica rapa GO terms from Neighborhoods
MF GO:0046906 tetrapyrrole binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0046923 ER retention sequence binding IEP Brassica rapa GO terms from Neighborhoods
BP GO:0051235 maintenance of location IEP Brassica rapa GO terms from Neighborhoods
BP GO:0051651 maintenance of location in cell IEP Brassica rapa GO terms from Neighborhoods
MF GO:0061134 peptidase regulator activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0061135 endopeptidase regulator activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0072595 maintenance of protein localization in organelle IEP Brassica rapa GO terms from Neighborhoods
MF GO:0098772 molecular function regulator activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0099106 ion channel regulator activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0140110 transcription regulator activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0140678 molecular function inhibitor activity IEP Brassica rapa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR004201 Cdc48_dom2 132 195
IPR041569 AAA_lid_3 673 714
IPR041569 AAA_lid_3 397 440
IPR003338 CDC4_N-term_subdom 30 110
IPR003959 ATPase_AAA_core 518 651
IPR003959 ATPase_AAA_core 245 374
No external refs found!