Lsat_1_v5_gn_7_37240.1 (GNC, GATA21)

Aliases : GNC, GATA21

Description : transcription factor *(A/B-GATA)

Gene families : OG0031929 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_7_37240.1
Cluster	Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_177

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000041	transition metal ion transport	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003919	FMN adenylyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004417	hydroxyethylthiazole kinase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0005381	iron ion transmembrane transporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0005542	folic acid binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006766	vitamin metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006767	water-soluble vitamin metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006771	riboflavin metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006772	thiamine metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006826	iron ion transport	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009110	vitamin biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009228	thiamine biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009231	riboflavin biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0016020	membrane	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016740	transferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016859	cis-trans isomerase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0022857	transmembrane transporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0031406	carboxylic acid binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0034308	primary alcohol metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0034309	primary alcohol biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0034755	iron ion transmembrane transport	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0042364	water-soluble vitamin biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0042723	thiamine-containing compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0042724	thiamine-containing compound biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0042726	flavin-containing compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0042727	flavin-containing compound biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0043177	organic acid binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0045300	acyl-[acyl-carrier-protein] desaturase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0046165	alcohol biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0070566	adenylyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0072341	modified amino acid binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR000679	Znf_GATA	184	218

External Links

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Lsat_1_v5_gn_7_37240.1 (GNC, GATA21)

Expression Profile

Co-expression Networks

Functional Annotation