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  5. Lsat_1_v5_gn_7_16760.1

Lsat_1_v5_gn_7_16760.1 (UBQ10, UBI10)


Aliases : UBQ10, UBI10

Description : UBQ ubiquitin-fold protein


Gene families : OG0000336 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000336_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_7_16760.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_18

Target Alias Description ECC score Gene Family Method Actions
Spov3_chr4.01128 UBQ10, UBI10 UBQ ubiquitin-fold protein 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0000375 RNA splicing, via transesterification reactions IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0000398 mRNA splicing, via spliceosome IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004518 nuclease activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0005516 calmodulin binding IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0005681 spliceosomal complex IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006099 tricarboxylic acid cycle IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006468 protein phosphorylation IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006534 cysteine metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009069 serine family amino acid metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009092 homoserine metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0010038 response to metal ion IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016756 glutathione gamma-glutamylcysteinyltransferase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0019346 transsulfuration IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0019748 secondary metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0044550 secondary metabolite biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0046912 acyltransferase activity, acyl groups converted into alkyl on transfer IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0046937 phytochelatin metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0046938 phytochelatin biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0050667 homocysteine metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR000626 Ubiquitin-like_dom 177 248
IPR000626 Ubiquitin-like_dom 405 476
IPR000626 Ubiquitin-like_dom 253 324
IPR000626 Ubiquitin-like_dom 101 172
IPR000626 Ubiquitin-like_dom 329 400
No external refs found!