Lsat_1_v5_gn_7_107260.1

Description : not classified

Gene families : OG0000973 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000973_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_7_107260.1
Cluster	Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_55

Target	Alias	Description	ECC score	Gene Family Method	Actions
Lsat_1_v5_gn_7_106240.1	No alias	not classified	0.02	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	None	Extended
MF	GO:0004559	alpha-mannosidase activity	IEA	Interproscan
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005996	monosaccharide metabolic process	None	Extended
BP	GO:0006013	mannose metabolic process	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0015923	mannosidase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
BP	GO:0019318	hexose metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000154	rRNA modification	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0001510	RNA methylation	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004176	ATP-dependent peptidase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004358	glutamate N-acetyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0005669	transcription factor TFIID complex	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006525	arginine metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006526	arginine biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0008064	regulation of actin polymerization or depolymerization	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008080	N-acetyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008170	N-methyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0008290	F-actin capping protein complex	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008649	rRNA methyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009064	glutamine family amino acid metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009084	glutamine family amino acid biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0010639	negative regulation of organelle organization	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016307	obsolete phosphatidylinositol phosphate kinase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016410	N-acyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016436	rRNA (uridine) methyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0030832	regulation of actin filament length	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0030833	regulation of actin filament polymerization	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0030834	regulation of actin filament depolymerization	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0030835	negative regulation of actin filament depolymerization	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0030837	negative regulation of actin filament polymerization	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0031167	rRNA methylation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0031333	negative regulation of protein-containing complex assembly	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0032271	regulation of protein polymerization	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0032272	negative regulation of protein polymerization	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0032535	regulation of cellular component size	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0032956	regulation of actin cytoskeleton organization	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0032970	regulation of actin filament-based process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0033043	regulation of organelle organization	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0043242	negative regulation of protein-containing complex disassembly	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0043244	regulation of protein-containing complex disassembly	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0043254	regulation of protein-containing complex assembly	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0044087	regulation of cellular component biogenesis	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0051016	barbed-end actin filament capping	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0051128	regulation of cellular component organization	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0051129	negative regulation of cellular component organization	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0051493	regulation of cytoskeleton organization	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0051494	negative regulation of cytoskeleton organization	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0051693	actin filament capping	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0065008	regulation of biological quality	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0070042	rRNA (uridine-N3-)-methyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0070475	rRNA base methylation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0090066	regulation of anatomical structure size	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0090575	RNA polymerase II transcription regulator complex	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0110053	regulation of actin filament organization	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0140102	catalytic activity, acting on a rRNA	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:1901879	regulation of protein depolymerization	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:1901880	negative regulation of protein depolymerization	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:1902903	regulation of supramolecular fiber organization	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:1902904	negative regulation of supramolecular fiber organization	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR011682	Glyco_hydro_38_C	26	94

External Links

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Lsat_1_v5_gn_7_107260.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation