Lsat_1_v5_gn_6_90700.1 (ATSCO1/CPEF-G, ATSCO1, SCO1)

Aliases : ATSCO1/CPEF-G, ATSCO1, SCO1

Description : translation elongation factor *(EF-G)

Gene families : OG0039680 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_6_90700.1
Cluster	Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_75

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003747	translation release factor activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004332	fructose-bisphosphate aldolase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004366	glycerol-3-phosphate O-acyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004375	glycine dehydrogenase (decarboxylating) activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004749	ribose phosphate diphosphokinase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004813	alanine-tRNA ligase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004827	proline-tRNA ligase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006082	organic acid metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006399	tRNA metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006415	translational termination	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006419	alanyl-tRNA aminoacylation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006433	prolyl-tRNA aminoacylation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006520	amino acid metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006536	glutamate metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006537	glutamate biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006544	glycine metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006546	glycine catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006729	tetrahydrobiopterin biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008079	translation termination factor activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008124	4-alpha-hydroxytetrahydrobiopterin dehydratase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009063	amino acid catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009064	glutamine family amino acid metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009071	serine family amino acid catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009084	glutamine family amino acid biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009165	nucleotide biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0015930	glutamate synthase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0016054	organic acid catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016491	oxidoreductase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016638	oxidoreductase activity, acting on the CH-NH2 group of donors	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016642	oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016730	oxidoreductase activity, acting on iron-sulfur proteins as donors	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016778	diphosphotransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016832	aldehyde-lyase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016859	cis-trans isomerase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0019751	polyol metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0019752	carboxylic acid metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0019898	extrinsic component of membrane	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0022411	cellular component disassembly	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0032977	membrane insertase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0032984	protein-containing complex disassembly	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0034311	diol metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0034312	diol biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0042558	pteridine-containing compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0042559	pteridine-containing compound biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0043038	amino acid activation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0043039	tRNA aminoacylation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0043436	oxoacid metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0043648	dicarboxylic acid metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0043650	dicarboxylic acid biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0044281	small molecule metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0044282	small molecule catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0046146	tetrahydrobiopterin metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0046165	alcohol biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0046173	polyol biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0046395	carboxylic acid catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0046855	obsolete inositol phosphate dephosphorylation	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0051537	2 iron, 2 sulfur cluster binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0140104	molecular carrier activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0140597	protein carrier chaperone	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:1901605	alpha-amino acid metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:1901606	alpha-amino acid catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR041095	EFG_II	481	554
IPR000795	T_Tr_GTP-bd_dom	86	358
IPR004161	EFTu-like_2	401	468
IPR000640	EFG_V-like	678	764
IPR005517	Transl_elong_EFG/EF2_IV	556	674

External Links

No external refs found!

Lsat_1_v5_gn_6_90700.1 (ATSCO1/CPEF-G, ATSCO1, SCO1)

Expression Profile

Co-expression Networks

Functional Annotation