Lsat_1_v5_gn_6_46001.1


Description : E3 ubiquitin ligase


Gene families : OG0004511 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0004511_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_6_46001.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_199


Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003916 DNA topoisomerase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006265 DNA topological change IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006418 tRNA aminoacylation for protein translation IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006996 organelle organization IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016846 carbon-sulfur lyase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0043038 amino acid activation IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0043039 tRNA aminoacylation IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0051276 chromosome organization IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0071103 DNA conformation change IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0090304 nucleic acid metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR011016 Znf_RING-CH 222 269
No external refs found!