- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : not classified
Gene families : OG0000051 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000051_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_6_4420.1 | |
| Cluster | Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_73 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Lsat_1_v5_gn_1_29861.1 | CRF2, TMO3 | not classified | 0.02 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Lsat_1_v5_gn_4_75501.1 | No alias | not classified | 0.02 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Lsat_1_v5_gn_5_170461.1 | No alias | not classified | 0.02 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Lsat_1_v5_gn_6_83201.1 | No alias | not classified | 0.02 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Lsat_1_v5_gn_8_22060.1 | ATRPB15.9,... | not classified | 0.02 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Lsat_1_v5_gn_9_46140.1 | SAUR61 | not classified | 0.01 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000213 | tRNA-intron endonuclease activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0000394 | RNA splicing, via endonucleolytic cleavage and ligation | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0004549 | tRNA-specific ribonuclease activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0004650 | polygalacturonase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006099 | tricarboxylic acid cycle | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006388 | tRNA splicing, via endonucleolytic cleavage and ligation | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0010215 | cellulose microfibril organization | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0016043 | cellular component organization | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0016892 | RNA endonuclease activity, producing 3'-phosphomonoesters | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0016894 | endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0016984 | ribulose-bisphosphate carboxylase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0017004 | cytochrome complex assembly | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0030198 | extracellular matrix organization | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0032392 | DNA geometric change | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0032508 | DNA duplex unwinding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0043062 | extracellular structure organization | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0045273 | respiratory chain complex II | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0071840 | cellular component organization or biogenesis | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0098803 | respiratory chain complex | IEP | Lactuca Sativa GO terms from Neighborhoods |
No InterPro domains available for this sequence
| No external refs found! |