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  5. Lsat_1_v5_gn_6_20961.1

Lsat_1_v5_gn_6_20961.1


Description : 3-dehydroquinate dehydratase and shikimate dehydrogenase


Gene families : OG0000290 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000290_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_6_20961.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_101

Target Alias Description ECC score Gene Family Method Actions
Lsat_1_v5_gn_1_10220.1 CPL3, ATCPL3 3-dehydroquinate dehydratase and shikimate dehydrogenase 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_5_43160.1 No alias solute transporter *(MTCC) 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004176 ATP-dependent peptidase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004252 serine-type endopeptidase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004417 hydroxyethylthiazole kinase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006508 proteolysis IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006766 vitamin metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006767 water-soluble vitamin metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006772 thiamine metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008233 peptidase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008236 serine-type peptidase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009110 vitamin biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009228 thiamine biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0017171 serine hydrolase activity IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0030126 COPI vesicle coat IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0030163 protein catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0034308 primary alcohol metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0034309 primary alcohol biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0042723 thiamine-containing compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0042724 thiamine-containing compound biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0046165 alcohol biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 3 60
No external refs found!