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  5. Lsat_1_v5_gn_6_11820.1

Lsat_1_v5_gn_6_11820.1 (UBC8, ATUBC8)


Aliases : UBC8, ATUBC8

Description : E2 MUB ubiquitin-conjugating enzyme


Gene families : OG0000797 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000797_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_6_11820.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_189

Target Alias Description ECC score Gene Family Method Actions
Spov3_chr2.00668 UBC11, ATUBC11 E2 MUB ubiquitin-conjugating enzyme 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.00864 UBC10, AtUBC10 E2 MUB ubiquitin-conjugating enzyme 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008483 transaminase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0010035 response to inorganic substance IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0010038 response to metal ion IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0019842 vitamin binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0020037 heme binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0022904 respiratory electron transport chain IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0030170 pyridoxal phosphate binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0046906 tetrapyrrole binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0070279 vitamin B6 binding IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR000608 UBQ-conjugat_E2 5 141
No external refs found!