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  5. Lsat_1_v5_gn_5_98641.1

Lsat_1_v5_gn_5_98641.1 (CRR21)


Aliases : CRR21

Description : RNA editing factor *(CRR21)


Gene families : OG0046900 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_5_98641.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_61


Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0002100 tRNA wobble adenosine to inosine editing IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003723 RNA binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004000 adenosine deaminase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0005315 inorganic phosphate transmembrane transporter activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0005542 folic acid binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006353 DNA-templated transcription termination IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006382 adenosine to inosine editing IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006400 tRNA modification IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006468 protein phosphorylation IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006793 phosphorus metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006796 phosphate-containing compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006817 phosphate ion transport IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008092 cytoskeletal protein binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008251 tRNA-specific adenosine deaminase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0015631 tubulin binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016307 obsolete phosphatidylinositol phosphate kinase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0016553 base conversion or substitution editing IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016740 transferase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0019239 deaminase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0031406 carboxylic acid binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0033218 amide binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0043015 gamma-tubulin binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0043177 organic acid binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0072341 modified amino acid binding IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR046848 E_motif 765 820
IPR002885 Pentatricopeptide_rpt 243 289
IPR002885 Pentatricopeptide_rpt 344 387
IPR002885 Pentatricopeptide_rpt 480 528
IPR002885 Pentatricopeptide_rpt 654 682
IPR002885 Pentatricopeptide_rpt 591 618
IPR002885 Pentatricopeptide_rpt 621 649
IPR002885 Pentatricopeptide_rpt 448 478
No external refs found!