1. Home
  2. Species
  3. Lactuca sativa
  4. Sequence
  5. Lsat_1_v5_gn_5_70140.1

Lsat_1_v5_gn_5_70140.1 (IBM1)


Aliases : IBM1

Description : histone demethylase *(KDM3)


Gene families : OG0000235 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000235_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_5_70140.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_215

Target Alias Description ECC score Gene Family Method Actions
Spov3_chr6.00867 JMJ29 histone demethylase *(KDM3) 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004652 obsolete polynucleotide adenylyltransferase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0015095 magnesium ion transmembrane transporter activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0015693 magnesium ion transport IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016779 nucleotidyltransferase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0030001 metal ion transport IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0043631 obsolete RNA polyadenylation IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0046873 metal ion transmembrane transporter activity IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR003347 JmjC_dom 1269 1369
No external refs found!