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  5. Lsat_1_v5_gn_5_64620.1

Lsat_1_v5_gn_5_64620.1 (NOC4, EMB2762)


Aliases : NOC4, EMB2762

Description : SSU processome assembly factor *(NOC4)


Gene families : OG0001006 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0001006_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_5_64620.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_86

Target Alias Description ECC score Gene Family Method Actions
Lsat_1_v5_gn_5_140320.1 APAP1 not classified 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0005375 copper ion transmembrane transporter activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006825 copper ion transport IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008270 zinc ion binding IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0009579 thylakoid IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009772 photosynthetic electron transport in photosystem II IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0015299 obsolete solute:proton antiporter activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0035434 copper ion transmembrane transport IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0046914 transition metal ion binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0046915 transition metal ion transmembrane transporter activity IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR005612 CCAAT-binding_factor 37 144
No external refs found!