Lsat_1_v5_gn_5_401.1 (ATMSH6, MSH6-1, MSH6)

Aliases : ATMSH6, MSH6-1, MSH6

Description : not classified

Gene families : OG0009548 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_5_401.1
Cluster	Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_3

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006298	mismatch repair	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	DNA damage response	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0030983	mismatched DNA binding	IEA	Interproscan
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006810	transport	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006835	dicarboxylic acid transport	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0015291	secondary active transmembrane transporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0015297	antiporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0015711	organic anion transport	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0015740	C4-dicarboxylate transport	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0015743	malate transport	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0015849	organic acid transport	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0022804	active transmembrane transporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0042910	xenobiotic transmembrane transporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0046942	carboxylic acid transport	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0051179	localization	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0051234	establishment of localization	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0071702	organic substance transport	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR007695	DNA_mismatch_repair_MutS-lik_N	60	100

External Links

No external refs found!

Lsat_1_v5_gn_5_401.1 (ATMSH6, MSH6-1, MSH6)

Expression Profile

Co-expression Networks

Functional Annotation