Bra006276 (SNL2)

Aliases : SNL2

Description : component *(SNL) of histone deacetylase machineries

Gene families : OG0001544 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0001544_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra006276
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_240

Type	GO Term	Name	Evidence	Source
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0000159	protein phosphatase type 2A complex	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003682	chromatin binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003712	transcription coregulator activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003774	cytoskeletal motor activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004484	mRNA guanylyltransferase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004652	obsolete polynucleotide adenylyltransferase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004721	phosphoprotein phosphatase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0005515	protein binding	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0005669	transcription factor TFIID complex	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0005694	chromosome	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006370	7-methylguanosine mRNA capping	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006536	glutamate metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006537	glutamate biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008138	protein tyrosine/serine/threonine phosphatase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008192	RNA guanylyltransferase activity	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0008287	protein serine/threonine phosphatase complex	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009064	glutamine family amino acid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009084	glutamine family amino acid biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009452	7-methylguanosine RNA capping	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0015930	glutamate synthase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016311	dephosphorylation	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0016459	myosin complex	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0016592	mediator complex	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016638	oxidoreductase activity, acting on the CH-NH2 group of donors	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016779	nucleotidyltransferase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016791	phosphatase activity	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0031011	Ino80 complex	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0032991	protein-containing complex	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0034450	ubiquitin-ubiquitin ligase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0036260	RNA capping	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0042578	phosphoric ester hydrolase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0043565	sequence-specific DNA binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043631	obsolete RNA polyadenylation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043648	dicarboxylic acid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043650	dicarboxylic acid biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0044877	protein-containing complex binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0070568	guanylyltransferase activity	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0070603	SWI/SNF superfamily-type complex	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0097346	INO80-type complex	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0140110	transcription regulator activity	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0140513	nuclear protein-containing complex	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:1902494	catalytic complex	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:1903293	phosphatase complex	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:1904949	ATPase complex	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR013194	HDAC_interact_dom	465	555
IPR003822	PAH	346	390
IPR003822	PAH	151	194
IPR003822	PAH	64	108
IPR031693	Sin3_C	1061	1310

External Links

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Bra006276 (SNL2)

Expression Profile

Co-expression Networks

Functional Annotation