Lsat_1_v5_gn_5_26021.1 (AtRH20, RH20)

Aliases : AtRH20, RH20

Description : not classified

Gene families : OG0000139 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000139_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_5_26021.1
Cluster	Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_105

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006418	tRNA aminoacylation for protein translation	IEA	Interproscan
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043038	amino acid activation	None	Extended
BP	GO:0043039	tRNA aminoacylation	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003876	AMP deaminase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004371	glycerone kinase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006066	alcohol metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006071	glycerol metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006188	IMP biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009123	nucleoside monophosphate metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009124	nucleoside monophosphate biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009126	purine nucleoside monophosphate metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009127	purine nucleoside monophosphate biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009156	ribonucleoside monophosphate biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009161	ribonucleoside monophosphate metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009167	purine ribonucleoside monophosphate metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009168	purine ribonucleoside monophosphate biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0009579	thylakoid	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016814	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0019239	deaminase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0019400	alditol metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0019751	polyol metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0031625	ubiquitin protein ligase binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0032261	purine nucleotide salvage	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0032264	IMP salvage	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0043094	cellular metabolic compound salvage	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0043101	purine-containing compound salvage	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0043173	nucleotide salvage	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0044183	protein folding chaperone	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0044389	ubiquitin-like protein ligase binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0046040	IMP metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0047623	adenosine-phosphate deaminase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0106380	purine ribonucleotide salvage	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0140662	ATP-dependent protein folding chaperone	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR002300	aa-tRNA-synth_Ia	24	56
IPR011545	DEAD/DEAH_box_helicase_dom	75	168

External Links

No external refs found!

Lsat_1_v5_gn_5_26021.1 (AtRH20, RH20)

Expression Profile

Co-expression Networks

Functional Annotation