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  5. Lsat_1_v5_gn_5_150361.1

Lsat_1_v5_gn_5_150361.1 (REME2)


Aliases : REME2

Description : not classified


Gene families : OG0004324 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0004324_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_5_150361.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_104

Target Alias Description ECC score Gene Family Method Actions
Bra008158 No alias not classified 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004176 ATP-dependent peptidase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004637 phosphoribosylamine-glycine ligase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006144 purine nucleobase metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006298 mismatch repair IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009112 nucleobase metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009113 purine nucleobase biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0031072 heat shock protein binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0046112 nucleobase biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0051082 unfolded protein binding IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_rpt 231 255
IPR002885 Pentatricopeptide_rpt 130 156
IPR002885 Pentatricopeptide_rpt 157 204
IPR002885 Pentatricopeptide_rpt 56 103
IPR002885 Pentatricopeptide_rpt 24 52
IPR046848 E_motif 274 335
IPR032867 DYW_dom 372 464
No external refs found!