Lsat_1_v5_gn_5_120581.1 (TBP2, ATTBP2)

Aliases : TBP2, ATTBP2

Description : TATA-box-binding component of TFIId basal transcription regulation complex. TATA-box-binding protein of RNA polymerase III-dependent transcription

Gene families : OG0000620 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000620_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_5_120581.1
Cluster	Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_218

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006352	DNA-templated transcription initiation	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004668	protein-arginine deiminase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004721	phosphoprotein phosphatase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006576	biogenic amine metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006595	polyamine metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006596	polyamine biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008138	protein tyrosine/serine/threonine phosphatase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009308	amine metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009309	amine biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009445	putrescine metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009446	putrescine biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0016311	dephosphorylation	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016787	hydrolase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016791	phosphatase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016813	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0042401	biogenic amine biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0042578	phosphoric ester hydrolase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR000814	TBP	112	195
IPR000814	TBP	23	104

External Links

No external refs found!

Lsat_1_v5_gn_5_120581.1 (TBP2, ATTBP2)

Expression Profile

Co-expression Networks

Functional Annotation