Lsat_1_v5_gn_4_92941.1 (GRF5, AtGRF5)

Aliases : GRF5, AtGRF5

Description : component *(GRF) of GRF-GIF transcriptional complex

Gene families : OG0002112 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0002112_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_4_92941.1
Cluster	Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_106

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000226	microtubule cytoskeleton organization	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0000272	polysaccharide catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003676	nucleic acid binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003714	transcription corepressor activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003723	RNA binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004190	aspartic-type endopeptidase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004402	histone acetyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004484	mRNA guanylyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004652	obsolete polynucleotide adenylyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004721	phosphoprotein phosphatase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0005216	monoatomic ion channel activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0005244	voltage-gated monoatomic ion channel activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0005247	voltage-gated chloride channel activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0005253	monoatomic anion channel activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0005254	chloride channel activity	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0005681	spliceosomal complex	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0005783	endoplasmic reticulum	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0005875	microtubule associated complex	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006354	DNA-templated transcription elongation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006368	transcription elongation by RNA polymerase II	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006370	7-methylguanosine mRNA capping	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006397	mRNA processing	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006414	translational elongation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006473	protein acetylation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006475	internal protein amino acid acetylation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006811	monoatomic ion transport	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006821	chloride transport	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006873	intracellular monoatomic ion homeostasis	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006874	intracellular calcium ion homeostasis	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0007051	spindle organization	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0008023	transcription elongation factor complex	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008138	protein tyrosine/serine/threonine phosphatase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008192	RNA guanylyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008308	voltage-gated monoatomic anion channel activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008509	monoatomic anion transmembrane transporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009057	macromolecule catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009452	7-methylguanosine RNA capping	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0015075	monoatomic ion transmembrane transporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0015108	chloride transmembrane transporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0015267	channel activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0016070	RNA metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0016071	mRNA metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016160	amylase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016161	beta-amylase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0016311	dephosphorylation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0016570	histone modification	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0016573	histone acetylation	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0016593	Cdc73/Paf1 complex	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0018393	internal peptidyl-lysine acetylation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0018394	peptidyl-lysine acetylation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0019725	cellular homeostasis	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0022803	passive transmembrane transporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0022832	voltage-gated channel activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0030003	intracellular monoatomic cation homeostasis	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0032469	endoplasmic reticulum calcium ion homeostasis	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0032774	RNA biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0034212	peptide N-acetyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0036260	RNA capping	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0042393	histone binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0042592	homeostatic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0043015	gamma-tubulin binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0043543	protein acylation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0043631	obsolete RNA polyadenylation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0048878	chemical homeostasis	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0050801	monoatomic ion homeostasis	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0051225	spindle assembly	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0055074	calcium ion homeostasis	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0055080	monoatomic cation homeostasis	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0055082	intracellular chemical homeostasis	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0061733	peptide-lysine-N-acetyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0070001	aspartic-type peptidase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0070568	guanylyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0070652	HAUS complex	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0070925	organelle assembly	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0071949	FAD binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0090304	nucleic acid metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0098771	inorganic ion homeostasis	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0140513	nuclear protein-containing complex	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0140694	non-membrane-bounded organelle assembly	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0140993	histone modifying activity	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR014978	Gln-Leu-Gln_QLQ	11	43
IPR014977	WRC_dom	82	123

External Links

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Lsat_1_v5_gn_4_92941.1 (GRF5, AtGRF5)

Expression Profile

Co-expression Networks

Functional Annotation