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  5. Lsat_1_v5_gn_4_85240.1

Lsat_1_v5_gn_4_85240.1 (4CL.1, AT4CL1, 4CL1)


Aliases : 4CL.1, AT4CL1, 4CL1

Description : EC_6.2 ligase forming carbon-sulfur bond. p-coumarate:CoA ligase *(4CL). p-coumarate:CoA ligase *(4CL)


Gene families : OG0017185 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_4_85240.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_168

Target Alias Description ECC score Gene Family Method Actions
Lsat_1_v5_gn_5_9201.1 4CL.1, AT4CL1, 4CL1 p-coumarate:CoA ligase *(4CL). EC_6.2 ligase forming... 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004497 monooxygenase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0005506 iron ion binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016491 oxidoreductase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0020037 heme binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0046906 tetrapyrrole binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0046914 transition metal ion binding IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR025110 AMP-bd_C 449 524
IPR000873 AMP-dep_Synth/Lig_com 31 440
No external refs found!