Lsat_1_v5_gn_4_70420.1 (AtClpS1, ClpS1)

Aliases : AtClpS1, ClpS1

Description : adaptor component *(ClpS) of chloroplast Clp-type protease complex

Gene families : OG0000114 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000114_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_4_70420.1
Cluster	Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_63

Target	Alias	Description	ECC score	Gene Family Method
Lsat_1_v5_gn_3_133181.1	No alias	not classified	0.03	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_4_123441.1	AtClpS1, ClpS1	adaptor component *(ClpS) of chloroplast Clp-type...	0.02	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_4_145001.1	AtClpS1, ClpS1	adaptor component *(ClpS) of chloroplast Clp-type...	0.02	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0030163	protein catabolic process	IEA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004645	1,4-alpha-oligoglucan phosphorylase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0005984	disaccharide metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0005985	sucrose metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0005986	sucrose biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008184	glycogen phosphorylase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008234	cysteine-type peptidase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009311	oligosaccharide metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009312	oligosaccharide biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0015977	carbon fixation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0016051	carbohydrate biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016984	ribulose-bisphosphate carboxylase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0019203	carbohydrate phosphatase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0046351	disaccharide biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0050307	sucrose-phosphate phosphatase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0050308	sugar-phosphatase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0051537	2 iron, 2 sulfur cluster binding	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR003769	ClpS_core	38	62

External Links

No external refs found!