| Cluster | Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_163 | Spov3_chr4.02471 details <a href="/cluster/view/641" data-toggle="tooltip" data-placement="top" title="View cluster as table"><i class="fa fa-list"></i></a> <a href="/cluster/graph/641" data-toggle="tooltip" data-placement="top" title="View cluster as graph"><i class="fa fa-sitemap"></i></a> <a href="/profile_comparison/cluster/641" data-toggle="tooltip" data-placement="top" title="Compare profiles in this cluster"><i class="fa fa-area-chart"></i></a> <a href="/heatmap/cluster/641" data-toggle="tooltip" data-placement="top" title="Heatmap of profiles in this cluster"><i class="fa fa-table"></i></a></td> </tr> </tbody> </table> </div> </div> <br> <br> <h3 class="banner-blue" id="annotation">Functional Annotation</h3> <div class="panel with-nav-tabs panel-default"> <div class="panel-heading"> <ul class="nav nav-tabs"> <li class="active"><a href="#tab1default" data-toggle="tab">GO</a></li> <li><a href="#tab2default" data-toggle="tab">Predicted GO</a></li> <li><a href="#tab3default" data-toggle="tab">InterPro</a></li> </ul> </div> <div> <div class="tab-content"> <div class="tab-pane fade in active" id="tab1default"> <div class="table-responsive"> <table class="table table-striped table-fixed" id="go_table"> <thead> <tr> <th class="col-xs-1" data-sort="string-ins"><span class="sort-icon"></span>Type</th> <th class="col-xs-2" data-sort="string-ins"><span class="sort-icon"></span><abbr title="Click to show help" href="/help/go" data-target="#helpModal">GO</abbr> Term</th> <th class="col-xs-6" data-sort="string-ins"><span class="sort-icon"></span>Name</th> <th class="col-xs-1" data-sort="string-ins"><span class="sort-icon"></span>Evidence</th> <th class="col-xs-2" data-sort="string-ins"><span class="sort-icon"></span>Source</th> </tr> </thead> <tbody> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/2629" data-toggle="tooltip" data-placement="top" title=""A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs." [GOC:pdt]">GO:0003674</a></td> <td class="col-xs-6">molecular_function</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/3938" data-toggle="tooltip" data-placement="top" title=""Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells." [GOC:ai, GOC:dgf]">GO:0005215</a></td> <td class="col-xs-6">transporter activity</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">CC</td> <td class="col-xs-2"><a href="/go/view/4161" data-toggle="tooltip" data-placement="top" title=""A location, relative to cellular compartments and structures, occupied by a macromolecular machine when it carries out a molecular function. There are two ways in which the gene ontology describes locations of gene products: (1) relative to cellular structures (e.g., cytoplasmic side of plasma membrane) or compartments (e.g., mitochondrion), and (2) the stable macromolecular complexes of which they are parts (e.g., the ribosome)." [GOC:pdt, NIF_Subcellular:sao1337158144]">GO:0005575</a></td> <td class="col-xs-6">cellular_component</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/5269" data-toggle="tooltip" data-placement="top" title=""The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or a transporter complex, a pore or a motor protein." [GOC:dos, GOC:dph, GOC:jl, GOC:mah]">GO:0006810</a></td> <td class="col-xs-6">transport</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/6130" data-toggle="tooltip" data-placement="top" title=""A biological process is the execution of a genetically-encoded biological module or program. It consists of all the steps required to achieve the specific biological objective of the module. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence." [GOC:pdt]">GO:0008150</a></td> <td class="col-xs-6">biological_process</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/7802" data-toggle="tooltip" data-placement="top" title=""Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level." [GOC:go_curators, GOC:isa_complete]">GO:0009987</a></td> <td class="col-xs-6">cellular process</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">CC</td> <td class="col-xs-2"><a href="/go/view/9874" data-toggle="tooltip" data-placement="top" title=""A lipid bilayer along with all the proteins and protein complexes embedded in it and attached to it." [GOC:dos, GOC:mah, ISBN:0815316194]">GO:0016020</a></td> <td class="col-xs-6">membrane</td> <td class="col-xs-1">IEA</td> <td class="col-xs-2">Interproscan</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/13296" data-toggle="tooltip" data-placement="top" title=""Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other." [GOC:jid, GOC:mtg_transport, ISBN:0815340729]">GO:0022857</a></td> <td class="col-xs-6">transmembrane transporter activity</td> <td class="col-xs-1">IEA</td> <td class="col-xs-2">Interproscan</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/27251" data-toggle="tooltip" data-placement="top" title=""Any process in which a cell, a substance, or a cellular entity, such as a protein complex or organelle, is transported, tethered to or otherwise maintained in a specific location. In the case of substances, localization may also be achieved via selective degradation." [GOC:ai, GOC:dos]">GO:0051179</a></td> <td class="col-xs-6">localization</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/27302" data-toggle="tooltip" data-placement="top" title=""Any process that localizes a substance or cellular component. This may occur via movement, tethering or selective degradation." [GOC:ai, GOC:dos]">GO:0051234</a></td> <td class="col-xs-6">establishment of localization</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/28851" data-toggle="tooltip" data-placement="top" title=""The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other." [GOC:dph, GOC:jid]">GO:0055085</a></td> <td class="col-xs-6">transmembrane transport</td> <td class="col-xs-1">IEA</td> <td class="col-xs-2">Interproscan</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">CC</td> <td class="col-xs-2"><a href="/go/view/38224" data-toggle="tooltip" data-placement="top" title=""A part of a cellular organism that is either an immaterial entity or a material entity with granularity above the level of a protein complex but below that of an anatomical system. Or, a substance produced by a cellular organism with granularity above the level of a protein complex." [GOC:kmv]">GO:0110165</a></td> <td class="col-xs-6">cellular anatomical entity</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> </tbody> </table> </div> <div class="panel-body"> <a href="#" id="go_toggle">Toggle parental</a> </div> </div> <div class="tab-pane fade" id="tab2default"> <div class="table-responsive"> <table class="table table-striped table-fixed" id="predicted_go_table"> <thead> <tr> <th class="col-xs-1" data-sort="string-ins"><span class="sort-icon"></span>Type</th> <th class="col-xs-2" data-sort="string-ins"><span class="sort-icon"></span><abbr title="Click to show help" href="/help/go" data-target="#helpModal">GO</abbr> Term</th> <th class="col-xs-6" data-sort="string-ins"><span class="sort-icon"></span>Name</th> <th class="col-xs-1" data-sort="string-ins"><span class="sort-icon"></span>Evidence</th> <th class="col-xs-2" data-sort="string-ins"><span class="sort-icon"></span>Source</th> </tr> </thead> <tbody> <tr style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/3642" data-toggle="tooltip" data-placement="top" title=""Binds to and stops, prevents or reduces the activity of an enzyme." [GOC:ai, GOC:ebc]">GO:0004857</a></td> <td class="col-xs-6">enzyme inhibitor activity</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Brassica rapa GO terms from Neighborhoods</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/13601" data-toggle="tooltip" data-placement="top" title=""Binds to and modulates the activity of an enzyme." [GOC:dph, GOC:mah, GOC:tb]">GO:0030234</a></td> <td class="col-xs-6">enzyme regulator activity</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Brassica rapa GO terms from Neighborhoods</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/36034" data-toggle="tooltip" data-placement="top" title=""A molecular function regulator regulates the activity of its target via non-covalent binding that does not result in covalent modification to the target. Examples of molecular function regulators include regulatory subunits of multimeric enzymes and channels. Mechanisms of regulation include allosteric changes in the target and competitive inhibition." [GOC:dos, GOC:pt]">GO:0098772</a></td> <td class="col-xs-6">molecular function regulator activity</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Brassica rapa GO terms from Neighborhoods</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/39036" data-toggle="tooltip" data-placement="top" title=""A molecular function regulator that inhibits or decreases the activity of its target via non-covalent binding that does not result in covalent modification to the target." [GOC:curators]">GO:0140678</a></td> <td class="col-xs-6">molecular function inhibitor activity</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Brassica rapa GO terms from Neighborhoods</td> </tr> </tbody> </table> </div> </div> <div class="tab-pane fade" id="tab3default"> <div class="table-responsive"> <table class="table table-striped table-fixed" id="interpro_table"> <thead> <tr> <th class="col-xs-3" data-sort="string-ins"><span class="sort-icon"></span><abbr title="Click to show help" href="/help/interpro_domain" data-target="#helpModal">InterPro domains</abbr></th> <th class="col-xs-5" data-sort="string-ins"><span class="sort-icon"></span>Description</th> <th class="col-xs-2" data-sort="int"><span class="sort-icon"></span>Start</th> <th class="col-xs-2" data-sort="int"><span class="sort-icon"></span>Stop</th> </tr> </thead> <tbody> <tr> <td class="col-xs-3"><a href="/interpro/view/24179">IPR029485</a></td> <td class="col-xs-5">CAT_C</td> <td class="col-xs-2">509</td> <td class="col-xs-2">559</td> </tr> <tr> <td class="col-xs-3"><a href="/interpro/view/1899">IPR002293</a></td> <td class="col-xs-5">AA/rel_permease1</td> <td class="col-xs-2">60</td> <td class="col-xs-2">484</td> </tr> </tbody> </table> </div> </div> </div> </div> </div> <div class="row"> <div class="col-lg-12 col-md-12 col-sm-12"> <div class="panel panel-default"> <div class="panel-heading" id="links">External Links</div> <div class="table-responsive"> <table class="table table-striped table-separated"> <tbody> <tr> <td><em>No external refs found!</em></td> </td> </tr> </tbody> </table> </div> </div> </div> </div> <div class="modal" id="profileModal" tabindex="-1" role="dialog" aria-labelledby="profileModalLabel"> <div class="modal-dialog" role="document" style="width:1000px;height:800px;"> <div class="modal-content"> </div> </div> </div> </div> </div> </div> <footer class="footer" id="footer"> <div class="container"> <div class="row"> <div class="col-xs-2"><strong class="text-muted"><a href="/features" class="text-muted">CoNekT</a></strong></div> <div class="col-xs-2"><a href="/about" class="text-muted">About</a></div> <div class="col-xs-2"><a href="/contact" class="text-muted">Contact</a></div> <div class="col-xs-2"><a href="/disclaimer" class="text-muted">Disclaimer</a></div> <div class="col-xs-2"><a href="/privacy" class="text-muted">Privacy policy</a></div> </div> </div> </footer> <div class="modal" id="helpModal" tabindex="-1" role="dialog" aria-labelledby="helpModalLabel"> <div class="modal-dialog" role="document" style="width:1000px;height:800px;"> <div class="modal-content"> </div> </div> </div> <div class="modal" id="loaderModal" tabindex="-1" role="dialog" aria-labelledby="loaderModalLabel"> <div class="modal-dialog" role="document" style="width:1000px;height:800px;"> <div class="modal-content"> <div class="modal-body"> <div id="leafy_loader"></div> <p class="text-center text-muted" id="leafy_loader_text">Loading ... please wait ... </p> <p class="text-center" id="leafy_loader_close_btn" style="display:none"><button type="button" class="btn btn-primary" data-dismiss="modal" style>Close</button></p> </div> </div> </div> </div> <script src="/static/js/jquery.min.js"></script> <script src="/static/js/bootstrap.min.js"></script> <script src="/static/js/stupidtable.min.js"></script> <script src="/static/js/TweenMax.min.js"></script> <script src="/static/js/jquery.qtip.min.js"></script> <script src="/static/js/planet_loader.js"></script> <script>
function init_qtip() {
$('.qtip_tooltip').each(function() {
$(this).qtip({
content: {
text: function(event, api) {
$.ajax({
url: api.elements.target.attr('qtip_href')
})
.then(function(content) {
// Set the tooltip content upon successful retrieval
api.set('content.text', content);
}, function(xhr, status, error) {
// Upon failure... set the tooltip content to error
api.set('content.text', status + ': ' + error);
});
return 'Loading...'; // Set some initial text
}
},
show: {
effect: function() {
$(this).fadeTo(500, 1);
}
},
hide: {
effect: function() {
$(this).fadeTo(500, 0);
}
},
position: {
viewport: $(window)
},
style: 'qtip-bootstrap'
});
});
}
$(function () {
init_qtip();
$("#leafy_loader").html(get_loader_svg('loader_leafy'));
init_planet_loader('loader_leafy');
$('[data-toggle="popover"]').popover({container: 'body'});
$('a[data-target=#helpModal], abbr[data-target=#helpModal]').click(function(ev) {
ev.preventDefault();
var target = $(this).attr("href");
// load the url and show modal on success
$("#helpModal .modal-content").load(target, function() {
$("#helpModal").modal("show");
});
});
});
</script> <script src="/static/js/planet_pagination.js"></script> <script src="/static/js/planet_ajax_table.js"></script> <script type="text/javascript">
var csrf_token = "IjA1MWUyYzJhMTFhMmYwZmJmYzkzMzNmMmM3MjIyYTc3MjgwYzBhOTki.GdDqpQ.39i2wgZA1Mfdq7R0-L5b1Qb4m58";
$.ajaxSetup({
beforeSend: function(xhr, settings) {
if (!/^(GET|HEAD|OPTIONS|TRACE)$/i.test(settings.type) && !this.crossDomain) {
xhr.setRequestHeader("X-CSRFToken", csrf_token);
}
}
});
</script> <script src="/static/js/Chart.min.js"></script> <script src="/static/js/hammer.min.js"></script> <script src="/static/js/chartjs-plugin-zoom.min.js"></script> <script>
$(function () {
$("#go_table").stupidtable();
$("#predicted_go_table").stupidtable();
$("#interpro_table").stupidtable();
$("#ecc_hits_table").stupidtable();
$("#coexpression_table").stupidtable();
$('[data-toggle="tooltip"]').tooltip();
$('a[data-target=#profileModal]').click(function(ev) {
ev.preventDefault();
var target = $(this).attr("href");
// load the url and show modal on success
$("#profileModal .modal-content").load(target, function() {
$("#profileModal").modal("show");
});
});
$("#go_toggle").click(function(ev) {
ev.preventDefault();
$(".parent_term").toggle();
});
$("#navbar-side a").on('click', function(event) {
// Make sure this.hash has a value before overriding default behavior
if (this.hash !== "") {
// Prevent default anchor click behavior
event.preventDefault();
// Store hash
var hash = this.hash;
// Using jQuery's animate() method to add smooth page scroll
// The optional number (800) specifies the number of milliseconds it takes to scroll to the specified area
$('html, body').animate({
scrollTop: $(hash).offset().top - 55
}, 800, function(){
// Add hash (#) to URL when done scrolling (default click behavior)
window.location.hash = hash;
});
} // End if
});
})
$( document ).ready(function() {
$.getJSON( "/profile/json/plot/25566", function( data ) {
var ctx = document.getElementById("expression-profile").getContext("2d");
data['options']['responsive'] = true;
data['options']['maintainAspectRatio'] = false;
data['options']['tooltips'] = {
enabled: true,
mode: 'label',
itemSort: function(a, b, data) {
conversion = {'Minimum': 0, 'Mean - Stdev':0, 'Mean': 1, 'Maximum': 2, 'Mean + Stdev': 2}
if (conversion[data.datasets[a.datasetIndex].label] > conversion[data.datasets[b.datasetIndex].label]) {
return -1
} else if (conversion[data.datasets[a.datasetIndex].label] < conversion[data.datasets[b.datasetIndex].label]) {
return 1
} else {
return 0
}
},
callbacks: {
afterTitle: function(tooltipItems, data) {
if (data.counts[tooltipItems[0].index] == null) {
return null;
} else {
if (data.counts[tooltipItems[0].index] == 1) {
return '(1 sample)';
} else {
return '(' + data.counts[tooltipItems[0].index] + ' samples)';
}
}
},
label: function(tooltipItems, data) {
return data.datasets[tooltipItems.datasetIndex].label + ': ' + tooltipItems.yLabel.toFixed(2);
}
}
}
var myChart = new Chart(ctx, data);
if (myChart.options.zoom.enabled) {
$("#enable_zoom").addClass("btn-success");
$("#enable_zoom").removeClass("btn-danger");
$("#enable_zoom").removeClass("btn-default");
} else {
$("#enable_zoom").addClass("btn-danger");
$("#enable_zoom").removeClass("btn-success");
$("#enable_zoom").removeClass("btn-default");
}
$("#enable_zoom").click( function(ev) {
ev.preventDefault();
myChart.options.zoom.enabled = ! myChart.options.zoom.enabled;
if (myChart.options.zoom.enabled) {
$(this).addClass("btn-success");
$(this).removeClass("btn-danger");
$(this).removeClass("btn-default");
} else {
$(this).addClass("btn-danger");
$(this).removeClass("btn-success");
$(this).removeClass("btn-default");
}
});
if (myChart.options.pan.enabled) {
$("#enable_pan").addClass("btn-success");
$("#enable_pan").removeClass("btn-danger");
$("#enable_pan").removeClass("btn-default");
} else {
$("#enable_pan").addClass("btn-danger");
$("#enable_pan").removeClass("btn-success");
$("#enable_pan").removeClass("btn-default");
}
$("#enable_pan").click( function(ev) {
ev.preventDefault();
myChart.options.pan.enabled = ! myChart.options.pan.enabled;
if (myChart.options.pan.enabled) {
$(this).addClass("btn-success");
$(this).removeClass("btn-danger");
$(this).removeClass("btn-default");
} else {
$(this).addClass("btn-danger");
$(this).removeClass("btn-success");
$(this).removeClass("btn-default");
}
});
});
});
</script> </body> </html> |
