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  5. Lsat_1_v5_gn_4_28800.1

Lsat_1_v5_gn_4_28800.1 (CAB3, LHCB1.2, AB180)


Aliases : CAB3, LHCB1.2, AB180

Description : component *(LHCb1/2/3) of LHC-II complex


Gene families : OG0000370 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000370_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_4_28800.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_13

Target Alias Description ECC score Gene Family Method Actions
Bra005423 LHCB1.5, LHB1B2 component *(LHCb1/2/3) of LHC-II complex. assembly... 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Bra005425 DEG11, LHCB1.4, LHB1B1 component *(LHCb1/2/3) of LHC-II complex 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Bra021909 DEG11, LHCB1.4, LHB1B1 component *(LHCb1/2/3) of LHC-II complex 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Bra022976 DEG11, LHCB1.4, LHB1B1 component *(LHCb1/2/3) of LHC-II complex 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Bra030181 CAB3, LHCB1.2, AB180 component *(LHCb1/2/3) of LHC-II complex 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Bra030182 CAB3, LHCB1.2, AB180 component *(LHCb1/2/3) of LHC-II complex 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004556 alpha-amylase activity IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0005575 cellular_component IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0005840 ribosome IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0005985 sucrose metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0005986 sucrose biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006412 translation IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006518 peptide metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006813 potassium ion transport IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0008152 metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0009521 photosystem IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0009522 photosystem I IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0009523 photosystem II IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0009538 photosystem I reaction center IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0009654 photosystem II oxygen evolving complex IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009987 cellular process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0010109 regulation of photosynthesis IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0010207 photosystem II assembly IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0010242 oxygen evolving activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0015299 obsolete solute:proton antiporter activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0015979 photosynthesis IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016160 amylase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0019203 carbohydrate phosphatase activity IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0019898 extrinsic component of membrane IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0032991 protein-containing complex IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0042548 regulation of photosynthesis, light reaction IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0042549 photosystem II stabilization IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0043043 peptide biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0043228 non-membrane-bounded organelle IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0043603 amide metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0043604 amide biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0044237 cellular metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0050307 sucrose-phosphate phosphatase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0050308 sugar-phosphatase activity IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0098796 membrane protein complex IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:1990204 oxidoreductase complex IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 65 231
No external refs found!