Lsat_1_v5_gn_4_22460.1 (DAU1, TRM16)

Aliases : DAU1, TRM16

Description : not classified

Gene families : OG0001274 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0001274_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_4_22460.1
Cluster	Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_49

Target	Alias	Description	ECC score	Gene Family Method	Actions
Lsat_1_v5_gn_9_60941.1	UBP25	not classified	0.02	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004843	cysteine-type deubiquitinase activity	IEA	Interproscan
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0008234	cysteine-type peptidase activity	None	Extended
BP	GO:0016579	protein deubiquitination	IEA	Interproscan
MF	GO:0016787	hydrolase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019783	ubiquitin-like protein peptidase activity	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043687	post-translational protein modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070646	protein modification by small protein removal	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0101005	deubiquitinase activity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004807	triose-phosphate isomerase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0005975	carbohydrate metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0005984	disaccharide metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0005985	sucrose metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0005986	sucrose biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0005991	trehalose metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0005992	trehalose biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009311	oligosaccharide metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009312	oligosaccharide biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0016051	carbohydrate biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016853	isomerase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016860	intramolecular oxidoreductase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016861	intramolecular oxidoreductase activity, interconverting aldoses and ketoses	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0019203	carbohydrate phosphatase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0030163	protein catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0046351	disaccharide biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0050307	sucrose-phosphate phosphatase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0050308	sugar-phosphatase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:1901565	organonitrogen compound catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR001394	Peptidase_C19_UCH	19	59

External Links

No external refs found!

Lsat_1_v5_gn_4_22460.1 (DAU1, TRM16)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation