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  5. Lsat_1_v5_gn_4_172260.1

Lsat_1_v5_gn_4_172260.1 (TAP2, ATTAP2, ABCB27,...)


Aliases : TAP2, ATTAP2, ABCB27, AtALS1, ALS1

Description : subfamily ABCB transporter


Gene families : OG0003295 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0003295_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_4_172260.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_184


Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
MF GO:0140359 ABC-type transporter activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0007275 multicellular organism development IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009057 macromolecule catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0019941 modification-dependent protein catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0022607 cellular component assembly IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0032501 multicellular organismal process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0032502 developmental process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0043933 protein-containing complex organization IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0048856 anatomical structure development IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0051259 protein complex oligomerization IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0051260 protein homooligomerization IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0051603 proteolysis involved in protein catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0065003 protein-containing complex assembly IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR011527 ABC1_TM_dom 1 186
IPR003439 ABC_transporter-like_ATP-bd 254 404
No external refs found!