Lsat_1_v5_gn_4_163961.1 (RPS2)

Aliases : RPS2

Description : not classified

Gene families : OG0003320 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0003320_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_4_163961.1
Cluster	Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_41

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000041	transition metal ion transport	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0000502	proteasome complex	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0003006	developmental process involved in reproduction	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003876	AMP deaminase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004559	alpha-mannosidase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004571	mannosyl-oligosaccharide 1,2-alpha-mannosidase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0005375	copper ion transmembrane transporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0005741	mitochondrial outer membrane	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006163	purine nucleotide metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006188	IMP biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006810	transport	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006811	monoatomic ion transport	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006820	monoatomic anion transport	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006825	copper ion transport	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009117	nucleotide metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009123	nucleoside monophosphate metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009124	nucleoside monophosphate biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009126	purine nucleoside monophosphate metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009127	purine nucleoside monophosphate biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009152	purine ribonucleotide biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009156	ribonucleoside monophosphate biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009161	ribonucleoside monophosphate metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009165	nucleotide biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009167	purine ribonucleoside monophosphate metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009168	purine ribonucleoside monophosphate biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009259	ribonucleotide metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0009579	thylakoid	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009790	embryo development	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009793	embryo development ending in seed dormancy	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009894	regulation of catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0015923	mannosidase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0015924	mannosyl-oligosaccharide mannosidase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0016020	membrane	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016168	chlorophyll binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016814	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0017004	cytochrome complex assembly	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0018130	heterocycle biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0019239	deaminase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0019693	ribose phosphate metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0019867	outer membrane	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0022414	reproductive process	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0030126	COPI vesicle coat	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0031966	mitochondrial membrane	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0031968	organelle outer membrane	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0032261	purine nucleotide salvage	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0032264	IMP salvage	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0034220	monoatomic ion transmembrane transport	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0035434	copper ion transmembrane transport	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0042176	regulation of protein catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0043094	cellular metabolic compound salvage	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0043101	purine-containing compound salvage	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0043173	nucleotide salvage	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0046040	IMP metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0047623	adenosine-phosphate deaminase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0051179	localization	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0051234	establishment of localization	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0055085	transmembrane transport	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0072521	purine-containing compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0090407	organophosphate biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0098655	monoatomic cation transmembrane transport	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0098660	inorganic ion transmembrane transport	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0098662	inorganic cation transmembrane transport	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0106380	purine ribonucleotide salvage	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:1905368	peptidase complex	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:1905369	endopeptidase complex	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR001865	Ribosomal_uS2	76	201

External Links

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Lsat_1_v5_gn_4_163961.1 (RPS2)

Expression Profile

Co-expression Networks

Functional Annotation