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  5. Lsat_1_v5_gn_4_131820.1

Lsat_1_v5_gn_4_131820.1 (LHCB5)


Aliases : LHCB5

Description : component *(LHCb5) of LHC-II complex


Gene families : OG0005300 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0005300_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_4_131820.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_13

Target Alias Description ECC score Gene Family Method Actions
Mp4g10900.1 LHCB5 component *(LHCb5) of LHC-II complex 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.00954 LHCB5 component *(LHCb5) of LHC-II complex 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004356 glutamine synthetase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0005261 monoatomic cation channel activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0005509 calcium ion binding IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0005575 cellular_component IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006091 generation of precursor metabolites and energy IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006163 purine nucleotide metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006164 purine nucleotide biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006541 glutamine metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006542 glutamine biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006721 terpenoid metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006754 ATP biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006778 porphyrin-containing compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0008150 biological_process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0008152 metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0008299 isoprenoid biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008883 glutamyl-tRNA reductase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009058 biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009064 glutamine family amino acid metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009117 nucleotide metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009141 nucleoside triphosphate metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009150 purine ribonucleotide metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009152 purine ribonucleotide biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009165 nucleotide biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009259 ribonucleotide metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009260 ribonucleotide biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0009507 chloroplast IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0009512 cytochrome b6f complex IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0009521 photosystem IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0009522 photosystem I IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0009523 photosystem II IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0009536 plastid IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0009538 photosystem I reaction center IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0009539 photosystem II reaction center IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0009654 photosystem II oxygen evolving complex IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009767 photosynthetic electron transport chain IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009987 cellular process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0010109 regulation of photosynthesis IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0010206 photosystem II repair IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0010207 photosystem II assembly IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0010242 oxygen evolving activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0015252 proton channel activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0015979 photosynthesis IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0015986 proton motive force-driven ATP synthesis IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0015994 chlorophyll metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0015995 chlorophyll biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0016043 cellular component organization IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0016114 terpenoid biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016211 ammonia ligase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016491 oxidoreductase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016744 transketolase or transaldolase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0018130 heterocycle biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0019438 aromatic compound biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0019693 ribose phosphate metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0019898 extrinsic component of membrane IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0022607 cellular component assembly IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0022900 electron transport chain IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0030091 protein repair IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0030145 manganese ion binding IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0032991 protein-containing complex IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0033013 tetrapyrrole metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0033014 tetrapyrrole biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0034641 cellular nitrogen compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0042440 pigment metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0042548 regulation of photosynthesis, light reaction IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0042549 photosystem II stabilization IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0043933 protein-containing complex organization IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0044237 cellular metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0044249 cellular biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0046034 ATP metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0046148 pigment biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0046390 ribose phosphate biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0046406 magnesium protoporphyrin IX methyltransferase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0065003 protein-containing complex assembly IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0070069 cytochrome complex IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0072521 purine-containing compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0072522 purine-containing compound biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0098796 membrane protein complex IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:1901137 carbohydrate derivative biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:1901293 nucleoside phosphate biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:1901362 organic cyclic compound biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:1901566 organonitrogen compound biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:1901576 organic substance biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:1902494 catalytic complex IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:1990204 oxidoreductase complex IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 89 250
No external refs found!