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  5. Lsat_1_v5_gn_4_125921.1

Lsat_1_v5_gn_4_125921.1 (SMP1)


Aliases : SMP1

Description : splicing factor *(SMP)


Gene families : OG0001190 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0001190_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_4_125921.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_18

Target Alias Description ECC score Gene Family Method Actions
Bra015276 SMP1 splicing factor *(SMP) 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005092 GDP-dissociation inhibitor activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0005488 binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0005515 protein binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0005525 GTP binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0005543 phospholipid binding IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0005681 spliceosomal complex IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006366 transcription by RNA polymerase II IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0007264 small GTPase mediated signal transduction IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008312 7S RNA binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009891 positive regulation of biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009893 positive regulation of metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0010038 response to metal ion IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0010604 positive regulation of macromolecule metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0010921 regulation of phosphatase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016756 glutathione gamma-glutamylcysteinyltransferase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0019001 guanyl nucleotide binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0019748 secondary metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0019902 phosphatase binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0019903 protein phosphatase binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0031325 positive regulation of cellular metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0031328 positive regulation of cellular biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0032561 guanyl ribonucleotide binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0032784 regulation of DNA-templated transcription elongation IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0032786 positive regulation of DNA-templated transcription, elongation IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0032968 positive regulation of transcription elongation by RNA polymerase II IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0034243 regulation of transcription elongation by RNA polymerase II IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0035091 phosphatidylinositol binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0035303 regulation of dephosphorylation IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0035304 regulation of protein dephosphorylation IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0043666 regulation of phosphoprotein phosphatase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0044550 secondary metabolite biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0045893 positive regulation of DNA-templated transcription IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0045944 positive regulation of transcription by RNA polymerase II IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0046937 phytochelatin metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0046938 phytochelatin biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0048500 signal recognition particle IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0048522 positive regulation of cellular process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0051254 positive regulation of RNA metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0051336 regulation of hydrolase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:1902680 positive regulation of RNA biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:1990904 ribonucleoprotein complex IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR021715 Slu7_dom 136 405
No external refs found!